U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CTNND1 catenin delta 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704212, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CTNND1provided by VGNC
    Official Full Name
    catenin delta 1provided by VGNC
    Primary source
    VGNC:VGNC:71546
    Locus tag
    EGK_06212
    See related
    Ensembl:ENSMMUG00000012366
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CTNND1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (15728320..15787476, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (15814011..15885851, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor 476-like Neighboring gene olfactory receptor 5B21 Neighboring gene BTB domain containing 18 Neighboring gene selenoprotein H

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    catenin delta-1
    Names
    catenin (cadherin-associated protein), delta 1
    p120 catenin

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266516.1 → NP_001253445.1  catenin delta-1

      See identical proteins and their annotated locations for NP_001253445.1

      Status: PROVISIONAL

      Source sequence(s)
      JV043580
      UniProtKB/TrEMBL
      F6QHG5, F6QHH2, H9Z094
      Related
      ENSMMUP00000037243.3, ENSMMUT00000044229.3
      Conserved Domains (2) summary
      smart00185
      Location:440 → 481
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      15728320..15787476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832618.1 → XP_028688451.1  catenin delta-1 isoform X5

      UniProtKB/TrEMBL
      A0A5S6R9P6, A0A8J8YNP2, F6QHF6, G7ND95, H9Z094
      Related
      ENSMMUP00000037244.3, ENSMMUT00000044230.3
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    2. XM_015114110.2 → XP_014969596.2  catenin delta-1 isoform X3

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    3. XM_028832620.1 → XP_028688453.1  catenin delta-1 isoform X9

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    4. XM_028832617.1 → XP_028688450.1  catenin delta-1 isoform X4

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    5. XM_015114111.2 → XP_014969597.2  catenin delta-1 isoform X6

      UniProtKB/TrEMBL
      H9FQE5, H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:440 → 481
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]

    6. XM_028832616.1 → XP_028688449.1  catenin delta-1 isoform X2

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:440 → 481
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]

    7. XM_015114106.2 → XP_014969592.2  catenin delta-1 isoform X1

      UniProtKB/TrEMBL
      F6QHE6, H9Z094
      Related
      ENSMMUP00000037245.3, ENSMMUT00000044231.3
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    8. XM_015114117.2 → XP_014969603.2  catenin delta-1 isoform X13

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:339 → 380
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:267 → 292
      ARM; armadillo repeat [structural motif]

    9. XM_015114119.2 → XP_014969605.2  catenin delta-1 isoform X15

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:339 → 380
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:267 → 292
      ARM; armadillo repeat [structural motif]

    10. XM_015114116.2 → XP_014969602.2  catenin delta-1 isoform X12

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:339 → 380
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:267 → 292
      ARM; armadillo repeat [structural motif]

    11. XM_015114118.2 → XP_014969604.2  catenin delta-1 isoform X14

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:339 → 380
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:267 → 292
      ARM; armadillo repeat [structural motif]

    12. XM_015114115.2 → XP_014969601.2  catenin delta-1 isoform X11

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:339 → 380
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:267 → 292
      ARM; armadillo repeat [structural motif]

    13. XM_015114112.2 → XP_014969598.2  catenin delta-1 isoform X8

      UniProtKB/TrEMBL
      F6QHG5, F6QHH2, H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:440 → 481
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]

    14. XM_015114113.2 → XP_014969599.2  catenin delta-1 isoform X10

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:386 → 427
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:314 → 339
      ARM; armadillo repeat [structural motif]

    15. XM_015114109.2 → XP_014969595.2  catenin delta-1 isoform X1

      UniProtKB/TrEMBL
      F6QHE6, H9Z094
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    16. XM_015114114.2 → XP_014969600.2  catenin delta-1 isoform X10

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:386 → 427
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:314 → 339
      ARM; armadillo repeat [structural motif]

    17. XM_028832615.1 → XP_028688448.1  catenin delta-1 isoform X1

      UniProtKB/TrEMBL
      F6QHE6, H9Z094
      Conserved Domains (3) summary
      smart00185
      Location:397 → 437
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:440 → 481
      Arm; Armadillo/beta-catenin-like repeat

    18. XM_028832619.1 → XP_028688452.1  catenin delta-1 isoform X7

      UniProtKB/TrEMBL
      H9Z094
      Conserved Domains (2) summary
      smart00185
      Location:440 → 481
      ARM; Armadillo/beta-catenin-like repeats
      sd00043
      Location:368 → 393
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.