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    SLF1 SMC5-SMC6 complex localization factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701994, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLF1provided by VGNC
    Official Full Name
    SMC5-SMC6 complex localization factor 1provided by VGNC
    Primary source
    VGNC:VGNC:84493
    See related
    Ensembl:ENSMMUG00000001392
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    ANKRD32; NFKBIL2
    Orthologs
    human mouse all
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    Genomic context

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    See SLF1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (91473293..91567868)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (91605683..91682979)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106998853 Neighboring gene KIAA0825 Neighboring gene uncharacterized LOC114679022 Neighboring gene FAST kinase domain-containing protein 1, mitochondrial pseudogene Neighboring gene multiple C2 and transmembrane domain containing 1 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP3 pseudogene Neighboring gene uncharacterized LOC114679019 Neighboring gene cytochrome c oxidase subunit 7C, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of double-strand break repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SMC5-SMC6 complex localization factor protein 1
    Names
    ankyrin repeat domain 32

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      91473293..91567868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028850070.1 → XP_028705903.1  SMC5-SMC6 complex localization factor protein 1 isoform X1

      Conserved Domains (4) summary
      sd00045
      Location:808 → 839
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:812 → 899
      Ank_2; Ankyrin repeats (3 copies)
      cd17750
      Location:6 → 85
      BRCT_SLF1; BRCT domain of SMC5-SMC6 complex localization factor protein 1 (SLF1) and similar proteins
      cl00038
      Location:127 → 198
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    2. XM_028850072.1 → XP_028705905.1  SMC5-SMC6 complex localization factor protein 1 isoform X4

      Conserved Domains (4) summary
      sd00045
      Location:808 → 839
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:812 → 899
      Ank_2; Ankyrin repeats (3 copies)
      cd17750
      Location:6 → 85
      BRCT_SLF1; BRCT domain of SMC5-SMC6 complex localization factor protein 1 (SLF1) and similar proteins
      cl00038
      Location:127 → 198
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    3. XM_028850071.1 → XP_028705904.1  SMC5-SMC6 complex localization factor protein 1 isoform X2

      Conserved Domains (4) summary
      sd00045
      Location:790 → 821
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:794 → 881
      Ank_2; Ankyrin repeats (3 copies)
      cd17750
      Location:6 → 85
      BRCT_SLF1; BRCT domain of SMC5-SMC6 complex localization factor protein 1 (SLF1) and similar proteins
      cl00038
      Location:127 → 198
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    4. XM_028850073.1 → XP_028705906.1  SMC5-SMC6 complex localization factor protein 1 isoform X5

      Conserved Domains (4) summary
      sd00045
      Location:758 → 789
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:762 → 849
      Ank_2; Ankyrin repeats (3 copies)
      cd17750
      Location:6 → 85
      BRCT_SLF1; BRCT domain of SMC5-SMC6 complex localization factor protein 1 (SLF1) and similar proteins
      cl00038
      Location:127 → 198
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains

    5. XM_001090273.4 → XP_001090273.2  SMC5-SMC6 complex localization factor protein 1 isoform X3

      UniProtKB/TrEMBL
      F7CZP2
      Related
      ENSMMUP00000001861.3, ENSMMUT00000001974.4
      Conserved Domains (4) summary
      cd00027
      Location:15 → 78
      BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
      cd00204
      Location:804 → 919
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:812 → 905
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:808 → 839
      ANK; ANK repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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