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    SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707641, updated on 5-Mar-2024

    Summary

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    Gene symbol
    SPECC1L
    Gene description
    sperm antigen with calponin homology and coiled-coil domains 1 like
    See related
    Ensembl:ENSMMUG00000008516
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    CYTSA
    Orthologs
    human mouse all
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    Genomic context

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    See SPECC1L in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (28847519..28994174, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (66423754..66570184)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene beta-ureidopropionase 1 Neighboring gene uncharacterized LOC107000611 Neighboring gene adenosine A2a receptor Neighboring gene uncharacterized LOC107000610 Neighboring gene histone H3.3-like Neighboring gene 40S ribosomal protein S10-like Neighboring gene uncharacterized LOC114670540 Neighboring gene rho GTPase-activating protein 15-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytospin-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257919.2 → NP_001244848.1  cytospin-A

      See identical proteins and their annotated locations for NP_001244848.1

      Status: PROVISIONAL

      Source sequence(s)
      JU322091
      UniProtKB/TrEMBL
      A0A5F8AM88, F6WRA1, F6WRC8
      Related
      ENSMMUP00000011165.2, ENSMMUT00000011906.4
      Conserved Domains (4) summary
      PHA03247
      Location:827 → 992
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:500 → 801
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12128
      Location:176 → 803
      DUF3584; Protein of unknown function (DUF3584)
      cd21199
      Location:1005 → 1116
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      28847519..28994174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149908.2 → XP_015005394.1  cytospin-A isoform X1

      UniProtKB/TrEMBL
      A0A5F8AM88, F6WRA1, F6WRC8
      Related
      ENSMMUP00000078493.1, ENSMMUT00000080775.1
      Conserved Domains (4) summary
      PHA03247
      Location:827 → 992
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:500 → 801
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12128
      Location:176 → 803
      DUF3584; Protein of unknown function (DUF3584)
      cd21199
      Location:1005 → 1116
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    2. XM_028827312.1 → XP_028683145.1  cytospin-A isoform X3

      Conserved Domains (1) summary
      cd21199
      Location:71 → 182
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    3. XM_028827311.1 → XP_028683144.1  cytospin-A isoform X2

      UniProtKB/TrEMBL
      A0A1D5Q2S7
      Related
      ENSMMUP00000042339.2, ENSMMUT00000067348.2
      Conserved Domains (4) summary
      PHA03247
      Location:800 → 965
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:473 → 774
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00014
      Location:988 → 1088
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12128
      Location:175 → 779
      DUF3584; Protein of unknown function (DUF3584)

    4. XM_015149910.2 → XP_015005396.1  cytospin-A isoform X1

      UniProtKB/TrEMBL
      A0A5F8AM88, F6WRA1, F6WRC8
      Conserved Domains (4) summary
      PHA03247
      Location:827 → 992
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:500 → 801
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12128
      Location:176 → 803
      DUF3584; Protein of unknown function (DUF3584)
      cd21199
      Location:1005 → 1116
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    5. XM_028827310.1 → XP_028683143.1  cytospin-A isoform X1

      UniProtKB/TrEMBL
      A0A5F8AM88, F6WRA1, F6WRC8
      Conserved Domains (4) summary
      PHA03247
      Location:827 → 992
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:500 → 801
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12128
      Location:176 → 803
      DUF3584; Protein of unknown function (DUF3584)
      cd21199
      Location:1005 → 1116
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    6. XM_028827308.1 → XP_028683141.1  cytospin-A isoform X1

      UniProtKB/TrEMBL
      A0A5F8AM88, F6WRA1, F6WRC8
      Conserved Domains (4) summary
      PHA03247
      Location:827 → 992
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:500 → 801
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12128
      Location:176 → 803
      DUF3584; Protein of unknown function (DUF3584)
      cd21199
      Location:1005 → 1116
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    7. XM_028827309.1 → XP_028683142.1  cytospin-A isoform X1

      UniProtKB/TrEMBL
      A0A5F8AM88, F6WRA1, F6WRC8
      Conserved Domains (4) summary
      PHA03247
      Location:827 → 992
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:500 → 801
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam12128
      Location:176 → 803
      DUF3584; Protein of unknown function (DUF3584)
      cd21199
      Location:1005 → 1116
      CH_CYTS; calponin homology (CH) domain found in the cytospin family

    RNA

    1. XR_003719769.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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