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    CBX5 chromobox 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703477, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CBX5provided by VGNC
    Official Full Name
    chromobox 5provided by VGNC
    Primary source
    VGNC:VGNC:70559
    Locus tag
    EGK_03730
    See related
    Ensembl:ENSMMUG00000004950
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CBX5 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (53845976..53889842, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (52911186..52954948, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670862 Neighboring gene single-strand-selective monofunctional uracil-DNA glycosylase 1 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 Neighboring gene nuclear factor, erythroid 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pericentric heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromobox protein homolog 5
    Names
    Heterochromatin protein 1-like protein alpha
    chromobox homolog 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266912.1 → NP_001253841.1  chromobox protein homolog 5

      See identical proteins and their annotated locations for NP_001253841.1

      Status: PROVISIONAL

      Source sequence(s)
      JV043983
      UniProtKB/TrEMBL
      A0A8J8Y6P4, F7C841, G7N765
      Related
      ENSMMUP00000075694.1, ENSMMUT00000107916.1
      Conserved Domains (2) summary
      cd18651
      Location:19 → 68
      CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
      cd18655
      Location:116 → 173
      CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      53845976..53889842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151807.2 → XP_015007293.1  chromobox protein homolog 5 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y6P4, F7C841, G7N765
      Related
      ENSMMUP00000006559.1, ENSMMUT00000006977.3
      Conserved Domains (2) summary
      cd18651
      Location:19 → 68
      CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
      cd18655
      Location:116 → 173
      CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha

    2. XM_015151808.2 → XP_015007294.1  chromobox protein homolog 5 isoform X1

      UniProtKB/TrEMBL
      A0A8J8Y6P4, F7C841, G7N765
      Conserved Domains (2) summary
      cd18651
      Location:19 → 68
      CD_HP1alpha_Cbx5; chromodomain of heterochromatin protein 1 homolog alpha
      cd18655
      Location:116 → 173
      CSD_HP1alpha_Cbx5; chromo shadow domain of heterochromatin protein 1 homolog alpha
    Nucleotide Protein
    Heading Accession and Version

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