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    PCIF1 phosphorylated CTD interacting factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708379, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PCIF1provided by VGNC
    Official Full Name
    phosphorylated CTD interacting factor 1provided by VGNC
    Primary source
    VGNC:VGNC:75621
    See related
    Ensembl:ENSMMUG00000013697
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PCIF1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (81118961..81133595)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (18561397..18574494, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A Neighboring gene phospholipid transfer protein Neighboring gene zinc finger protein 335 Neighboring gene matrix metallopeptidase 9 Neighboring gene solute carrier family 12 member 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase
    Names
    PDX1 C-terminal inhibiting factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      81118961..81133595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015148917.2 → XP_015004403.1  mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase

      UniProtKB/TrEMBL
      A0A5F7ZJ25, F6S613, H9FYB1
      Related
      ENSMMUP00000018014.3, ENSMMUT00000019234.4
      Conserved Domains (2) summary
      cd00201
      Location:47 → 77
      WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
      pfam12237
      Location:453 → 616
      PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain
    Nucleotide Protein
    Heading Accession and Version

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