U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SETD1A SET domain containing 1A, histone lysine methyltransferase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712416, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SETD1A
    Gene description
    SET domain containing 1A, histone lysine methyltransferase
    See related
    Ensembl:ENSMMUG00000003233
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SETD1A in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (28378506..28406164)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (28769451..28797734)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene cardiotrophin 2 Neighboring gene F-box and leucine rich repeat protein 19 Neighboring gene ORAI calcium release-activated calcium modulator 3 Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 Neighboring gene syntaxin 1B

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K4 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Set1C/COMPASS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    histone-lysine N-methyltransferase SETD1A
    Names
    histone-lysine N-methyltransferase SETD1A-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      28378506..28406164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125982.2 → XP_014981468.2  histone-lysine N-methyltransferase SETD1A

      UniProtKB/TrEMBL
      A0A1D5R1K8, F7DNU6
      Related
      ENSMMUP00000066314.1, ENSMMUT00000081599.1
      Conserved Domains (4) summary
      smart00317
      Location:1571 → 1694
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:1694 → 1710
      PostSET; Cysteine-rich motif following a subset of SET domains
      cd12548
      Location:92 → 186
      RRM_Set1A; RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1A (Set1A)
      pfam11764
      Location:1428 → 1565
      N-SET; COMPASS (Complex proteins associated with Set1p) component N

    2. XM_015125983.2 → XP_014981469.2  histone-lysine N-methyltransferase SETD1A

      UniProtKB/TrEMBL
      A0A1D5R1K8, F7DNU6
      Conserved Domains (4) summary
      smart00317
      Location:1571 → 1694
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:1694 → 1710
      PostSET; Cysteine-rich motif following a subset of SET domains
      cd12548
      Location:92 → 186
      RRM_Set1A; RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1A (Set1A)
      pfam11764
      Location:1428 → 1565
      N-SET; COMPASS (Complex proteins associated with Set1p) component N

    3. XM_028840645.1 → XP_028696478.1  histone-lysine N-methyltransferase SETD1A

      UniProtKB/TrEMBL
      A0A1D5R1K8, F7DNU6
      Conserved Domains (4) summary
      smart00317
      Location:1571 → 1694
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:1694 → 1710
      PostSET; Cysteine-rich motif following a subset of SET domains
      cd12548
      Location:92 → 186
      RRM_Set1A; RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1A (Set1A)
      pfam11764
      Location:1428 → 1565
      N-SET; COMPASS (Complex proteins associated with Set1p) component N

    4. XM_015125987.2 → XP_014981473.2  histone-lysine N-methyltransferase SETD1A

      UniProtKB/TrEMBL
      A0A1D5R1K8, F7DNU6
      Conserved Domains (4) summary
      smart00317
      Location:1571 → 1694
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:1694 → 1710
      PostSET; Cysteine-rich motif following a subset of SET domains
      cd12548
      Location:92 → 186
      RRM_Set1A; RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1A (Set1A)
      pfam11764
      Location:1428 → 1565
      N-SET; COMPASS (Complex proteins associated with Set1p) component N

    5. XM_028840644.1 → XP_028696477.1  histone-lysine N-methyltransferase SETD1A

      UniProtKB/TrEMBL
      A0A1D5R1K8, F7DNU6
      Related
      ENSMMUP00000004313.4, ENSMMUT00000004577.4
      Conserved Domains (4) summary
      smart00317
      Location:1571 → 1694
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      smart00508
      Location:1694 → 1710
      PostSET; Cysteine-rich motif following a subset of SET domains
      cd12548
      Location:92 → 186
      RRM_Set1A; RNA recognition motif in vertebrate histone-lysine N-methyltransferase Setd1A (Set1A)
      pfam11764
      Location:1428 → 1565
      N-SET; COMPASS (Complex proteins associated with Set1p) component N
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials