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    IFT172 intraflagellar transport 172 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 700948, updated on 17-Aug-2024

    Summary

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    Official Symbol
    IFT172provided by VGNC
    Official Full Name
    intraflagellar transport 172provided by VGNC
    Primary source
    VGNC:VGNC:73460
    Locus tag
    EGK_05170
    See related
    Ensembl:ENSMMUG00000005096
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See IFT172 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    50
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (81461710..81506668)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (27740173..27786454, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene glucokinase regulator Neighboring gene uncharacterized LOC114671747 Neighboring gene fibronectin type III domain containing 4 Neighboring gene U6 spliceosomal RNA Neighboring gene keratinocyte associated protein 3 Neighboring gene nuclear receptor binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ciliary basal body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of intraciliary transport particle B IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    intraflagellar transport protein 172 homolog
    Names
    intraflagellar transport 172 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257589.1 → NP_001244518.1  intraflagellar transport protein 172 homolog

      See identical proteins and their annotated locations for NP_001244518.1

      Status: PROVISIONAL

      Source sequence(s)
      JU321776
      UniProtKB/TrEMBL
      A0A1D5QSE6, A0A8J8XEA2, F7BYN0, G7N9P5
      Related
      ENSMMUP00000050974.1, ENSMMUT00000062285.2
      Conserved Domains (5) summary
      COG2319
      Location:17 → 388
      WD40; WD40 repeat [General function prediction only]
      cd15832
      Location:811 → 866
      SNAP; TPR repeat [structural motif]
      sd00039
      Location:20 → 64
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:17 → 318
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl24038
      Location:808 → 994
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      81461710..81506668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028831461.1 → XP_028687294.1  intraflagellar transport protein 172 homolog isoform X1

      UniProtKB/TrEMBL
      F7BYN0
      Conserved Domains (4) summary
      cd15832
      Location:790 → 845
      SNAP; TPR repeat [structural motif]
      sd00039
      Location:2 → 43
      7WD40; WD40 repeat [structural motif]
      cl24038
      Location:787 → 973
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
      cl29593
      Location:1 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015111911.2 → XP_014967397.1  intraflagellar transport protein 172 homolog isoform X2

      UniProtKB/TrEMBL
      F7BYN0
      Conserved Domains (2) summary
      cd15832
      Location:562 → 617
      SNAP; TPR repeat [structural motif]
      cl24038
      Location:559 → 745
      SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
    Nucleotide Protein
    Heading Accession and Version

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