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    C1D C1D nuclear receptor corepressor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698450, updated on 5-Mar-2024

    Summary

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    Gene symbol
    C1D
    Gene description
    C1D nuclear receptor corepressor
    See related
    Ensembl:ENSMMUG00000017209
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See C1D in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (40699233..40719651)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (69113448..69133669, complement)

    Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671949 Neighboring gene uncharacterized LOC106992995 Neighboring gene F-box/LRR-repeat protein 12-like Neighboring gene uncharacterized LOC106993024

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human. Magness CL, et al. Genome Biol, 2005. PMID 15998449, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of 5.8S rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear nucleic acid-binding protein C1D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193604.1 → NP_001180533.1  nuclear nucleic acid-binding protein C1D

      See identical proteins and their annotated locations for NP_001180533.1

      Status: VALIDATED

      Source sequence(s)
      CB309384, CO647214
      UniProtKB/TrEMBL
      F7HGG1, H9FNQ1, H9Z4C0
      Related
      ENSMMUP00000022634.4, ENSMMUT00000024189.4
      Conserved Domains (1) summary
      pfam04000
      Location:18 → 96
      Sas10_Utp3; Sas10/Utp3/C1D family

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041766.1 Reference Mmul_10 Primary Assembly

      Range
      40699233..40719651
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015112509.2 → XP_014967995.1  nuclear nucleic acid-binding protein C1D isoform X1

      UniProtKB/TrEMBL
      F7HGG1, H9FNQ1, H9Z4C0
      Related
      ENSMMUP00000064972.1, ENSMMUT00000084913.1
      Conserved Domains (1) summary
      pfam04000
      Location:18 → 96
      Sas10_Utp3; Sas10/Utp3/C1D family

    2. XM_028831449.1 → XP_028687282.1  nuclear nucleic acid-binding protein C1D isoform X1

      UniProtKB/TrEMBL
      F7HGG1, H9FNQ1, H9Z4C0
      Conserved Domains (1) summary
      pfam04000
      Location:18 → 96
      Sas10_Utp3; Sas10/Utp3/C1D family
    Nucleotide Protein
    Heading Accession and Version

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