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    FUBP1 far upstream element binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707102, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FUBP1provided by VGNC
    Official Full Name
    far upstream element binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:99956
    See related
    Ensembl:ENSMMUG00000002899
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See FUBP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (146413885..146453583)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (77994076..78033835, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene GIPC PDZ domain containing family member 2 Neighboring gene translocon-associated protein subunit gamma pseudogene Neighboring gene omega-amidase NIT2 pseudogene Neighboring gene DnaJ heat shock protein family (Hsp40) member B4 Neighboring gene nexilin F-actin binding protein Neighboring gene putative uncharacterized protein NEXN-AS1 Neighboring gene nuclear speckle splicing regulatory protein 1 pseudogene Neighboring gene mitoguardin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    far upstream element-binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      146413885..146453583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015143099.2 → XP_014998585.1  far upstream element-binding protein 1 isoform X3

      UniProtKB/TrEMBL
      F7HB87
      Conserved Domains (5) summary
      pfam09005
      Location:623 → 643
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:119 → 193
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:207 → 276
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:297 → 364
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:397 → 468
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    2. XM_015143133.2 → XP_014998619.1  far upstream element-binding protein 1 isoform X8

      UniProtKB/TrEMBL
      F7HB87, H9G1C9
      Related
      ENSMMUP00000067630.1, ENSMMUT00000081936.1
      Conserved Domains (2) summary
      pfam09005
      Location:602 → 622
      DUF1897; Domain of unknown function (DUF1897)
      cl00098
      Location:98 → 172
      KH-I; K homology (KH) RNA-binding domain, type I

    3. XM_015143122.2 → XP_014998608.1  far upstream element-binding protein 1 isoform X7

      UniProtKB/TrEMBL
      F7HB87
      Conserved Domains (5) summary
      pfam09005
      Location:601 → 621
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:97 → 171
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:185 → 254
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:275 → 342
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:375 → 446
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    4. XM_028832274.1 → XP_028688107.1  far upstream element-binding protein 1 isoform X9

      UniProtKB/TrEMBL
      F7HB87, H9ZEV7
      Related
      ENSMMUP00000048143.2, ENSMMUT00000069299.2
      Conserved Domains (5) summary
      pfam09005
      Location:601 → 621
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:97 → 171
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:185 → 254
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:275 → 342
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:375 → 446
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    5. XM_015143080.2 → XP_014998566.1  far upstream element-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      F7HB87
      Conserved Domains (5) summary
      pfam09005
      Location:623 → 643
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:119 → 193
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:207 → 276
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:297 → 364
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:397 → 468
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    6. XM_015143112.2 → XP_014998598.1  far upstream element-binding protein 1 isoform X4

      UniProtKB/TrEMBL
      F7HB87
      Conserved Domains (5) summary
      pfam09005
      Location:623 → 643
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:119 → 193
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:207 → 276
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:297 → 364
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:397 → 468
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    7. XM_028832256.1 → XP_028688089.1  far upstream element-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      F7HB87
      Conserved Domains (5) summary
      pfam09005
      Location:622 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:118 → 192
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:206 → 275
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:296 → 363
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:396 → 467
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    8. XM_028832263.1 → XP_028688096.1  far upstream element-binding protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QLH1, F7HB87
      Related
      ENSMMUP00000048896.2, ENSMMUT00000064940.2
      Conserved Domains (5) summary
      pfam09005
      Location:622 → 642
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:118 → 192
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:206 → 275
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:296 → 363
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:396 → 467
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    9. XM_028832265.1 → XP_028688098.1  far upstream element-binding protein 1 isoform X6

      UniProtKB/TrEMBL
      F7HB87, G7MHS0
      Conserved Domains (5) summary
      pfam09005
      Location:602 → 622
      DUF1897; Domain of unknown function (DUF1897)
      cd22478
      Location:98 → 172
      KH-I_FUBP1_rpt1; first type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22481
      Location:186 → 255
      KH-I_FUBP1_rpt2; second type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22484
      Location:276 → 343
      KH-I_FUBP1_rpt3; third type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins
      cd22487
      Location:376 → 447
      KH-I_FUBP1_rpt4; fourth type I K homology (KH) RNA-binding domain found in far upstream element-binding protein 1 (FUBP1) and similar proteins

    10. XM_028832279.1 → XP_028688112.1  far upstream element-binding protein 1 isoform X10

      UniProtKB/TrEMBL
      F7HB87
      Conserved Domains (3) summary
      cd00105
      Location:214 → 275
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam09005
      Location:538 → 558
      DUF1897; Domain of unknown function (DUF1897)
      pfam00013
      Location:39 → 102
      KH_1; KH domain

    RNA

    1. XR_003722041.1 RNA Sequence

    2. XR_001446119.2 RNA Sequence

    3. XR_003722046.1 RNA Sequence

    4. XR_003722011.1 RNA Sequence

    5. XR_001446113.2 RNA Sequence

    6. XR_001446115.2 RNA Sequence

    7. XR_001446112.2 RNA Sequence

    8. XR_001446114.2 RNA Sequence

    9. XR_001446116.2 RNA Sequence

    10. XR_003722028.1 RNA Sequence

    11. XR_001446118.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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