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    CAPNS1 calpain small subunit 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712561, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPNS1provided by VGNC
    Official Full Name
    calpain small subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:108488
    See related
    Ensembl:ENSMMUG00000000249
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CAPNS1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (35565328..35577442)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (32081496..32093364)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene ovo like zinc finger 3 Neighboring gene RNA polymerase II subunit I Neighboring gene tubulin folding cofactor B Neighboring gene cytochrome c oxidase subunit 7A1 Neighboring gene uncharacterized LOC106994748

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain small subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      35565328..35577442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015123734.2 → XP_014979220.1  calpain small subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R5G3, F6X9V6
      Related
      ENSMMUP00000000343.4, ENSMMUT00000000366.4
      Conserved Domains (1) summary
      cd16188
      Location:98 → 266
      EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

    2. XM_015123735.2 → XP_014979221.1  calpain small subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R5G3, F6X9V6
      Conserved Domains (1) summary
      cd16188
      Location:98 → 266
      EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2

    3. XM_015123738.2 → XP_014979224.1  calpain small subunit 1 isoform X3

      UniProtKB/TrEMBL
      H9FC97
      Conserved Domains (2) summary
      cd00051
      Location:76 → 126
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl08302
      Location:107 → 162
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    4. XM_015123736.2 → XP_014979222.1  calpain small subunit 1 isoform X2

      UniProtKB/TrEMBL
      H9FC97
      Conserved Domains (1) summary
      cd16188
      Location:38 → 206
      EFh_PEF_CPNS1_2; Penta-EF hand, calcium binding motifs, found in calcium-dependent protease small subunit CAPNS1 and CAPNS2
    Nucleotide Protein
    Heading Accession and Version

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