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    COPS5 COP9 signalosome subunit 5 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704584, updated on 17-Aug-2024

    Summary

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    Official Symbol
    COPS5provided by VGNC
    Official Full Name
    COP9 signalosome subunit 5provided by VGNC
    Primary source
    VGNC:VGNC:71317
    Locus tag
    EGK_19011
    See related
    Ensembl:ENSMMUG00000006281
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See COPS5 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (67691648..67710173, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (65185045..65205697, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 42 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp3 pseudogene Neighboring gene U2 spliceosomal RNA Neighboring gene centrosome and spindle pole associated protein 1 Neighboring gene nucleophosmin pseudogene Neighboring gene ADP ribosylation factor guanine nucleotide exchange factor 1 Neighboring gene uncharacterized LOC114680272

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables deNEDDylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deneddylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COP9 signalosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP9 signalosome complex subunit 5
    Names
    COP9 constitutive photomorphogenic homolog subunit 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260680.1 → NP_001247609.1  COP9 signalosome complex subunit 5

      See identical proteins and their annotated locations for NP_001247609.1

      Status: PROVISIONAL

      Source sequence(s)
      JU470792
      UniProtKB/TrEMBL
      A0A8J8YIR5, F7H142, G7MZH4
      Related
      ENSMMUP00000008263.2, ENSMMUT00000008791.4
      Conserved Domains (1) summary
      cd08069
      Location:44 → 314
      MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      67691648..67710173 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015145411.1 → XP_015000897.1  COP9 signalosome complex subunit 5 isoform X2

      Conserved Domains (1) summary
      cd08069
      Location:1 → 250
      MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

    2. XM_015145409.1 → XP_015000895.1  COP9 signalosome complex subunit 5 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YIR5, F7H142, G7MZH4
      Conserved Domains (1) summary
      cd08069
      Location:44 → 314
      MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

    3. XM_015145410.1 → XP_015000896.1  COP9 signalosome complex subunit 5 isoform X2

      Conserved Domains (1) summary
      cd08069
      Location:1 → 250
      MPN_RPN11_CSN5; Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5

    RNA

    1. XR_001446676.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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