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    CHD2 chromodomain helicase DNA binding protein 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706310, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD2provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 2provided by VGNC
    Primary source
    VGNC:VGNC:71028
    Locus tag
    EGK_17855
    See related
    Ensembl:ENSMMUG00000011782
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (71945448..72092751)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (71147518..71304900)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114679496 Neighboring gene family with sequence similarity 174 member B Neighboring gene ankyrin repeat and SOCS box protein 9 pseudogene Neighboring gene Y-box-binding protein 2 pseudogene Neighboring gene uncharacterized LOC106999299 Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene uncharacterized LOC114679498

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 2
    Names
    Chromodomain-helicase-DNA-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      71945448..72092751
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028851327.1 → XP_028707160.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      UniProtKB/TrEMBL
      F7FQ31
      Conserved Domains (5) summary
      PLN03142
      Location:370 → 923
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam13907
      Location:1373 → 1455
      DUF4208; Domain of unknown function (DUF4208)
      cd18661
      Location:278 → 349
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:161 → 245
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:366 → 602
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2

    2. XM_028851326.1 → XP_028707159.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A663D734, A0A8J8XT53, F7FQ31, F7HNG3, G7MW02
      Related
      ENSMMUP00000015471.3, ENSMMUT00000016513.4
      Conserved Domains (6) summary
      PLN03142
      Location:468 → 1021
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:376 → 447
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:259 → 343
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:464 → 700
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1471 → 1553
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1130 → 1218
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    3. XM_015143069.2 → XP_014998555.1  chromodomain-helicase-DNA-binding protein 2 isoform X6

      Conserved Domains (3) summary
      cd18661
      Location:389 → 460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cl28899
      Location:477 → 514
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    4. XM_015143064.2 → XP_014998550.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      F7FQ31
      Related
      ENSMMUP00000033251.3, ENSMMUT00000040181.3
      Conserved Domains (6) summary
      PLN03142
      Location:481 → 1034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389 → 460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477 → 713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1484 → 1566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1143 → 1231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    5. XM_015143067.2 → XP_014998553.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

      UniProtKB/TrEMBL
      F7FQ31
      Conserved Domains (6) summary
      PLN03142
      Location:445 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:353 → 424
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:236 → 320
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:441 → 677
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1448 → 1530
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1107 → 1195
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    6. XM_028851325.1 → XP_028707158.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      UniProtKB/TrEMBL
      F7FQ31
      Conserved Domains (5) summary
      PLN03142
      Location:475 → 1028
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam13907
      Location:1478 → 1560
      DUF4208; Domain of unknown function (DUF4208)
      cd18661
      Location:383 → 454
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:266 → 350
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:471 → 707
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
    Nucleotide Protein
    Heading Accession and Version

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