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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference Mmul_10 Primary Assembly
Genomic
-
NC_041755.1 Reference Mmul_10 Primary Assembly
- Range
-
129500418..129740849 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_028844367.1 → XP_028700200.1 E3 ubiquitin-protein ligase PDZRN3 isoform X2
- UniProtKB/TrEMBL
- F7E722, G7MKV8
- Related
- ENSMMUP00000016634.4, ENSMMUT00000017761.4
- Conserved Domains (5) summary
-
- smart00228
Location:245 → 309
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:391 → 459
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cd00162
Location:18 → 56
- RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
- cl17238
Location:17 → 58
- RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
- cl19105
Location:69 → 132
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
-
XM_001098466.4 → XP_001098466.2 E3 ubiquitin-protein ligase PDZRN3 isoform X1
See identical proteins and their annotated locations for XP_001098466.2
- UniProtKB/TrEMBL
- F7E732, G7MKV8
- Related
- ENSMMUP00000016631.2, ENSMMUT00000017758.4
- Conserved Domains (4) summary
-
- smart00228
Location:246 → 338
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00162
Location:17 → 57
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cd00992
Location:420 → 488
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl19105
Location:69 → 132
- Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...
-
XM_015130386.2 → XP_014985872.1 E3 ubiquitin-protein ligase PDZRN3 isoform X4
- UniProtKB/TrEMBL
-
A0A5F8A5K1
- Conserved Domains (2) summary
-
- smart00228
Location:5 → 36
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- cd00992
Location:118 → 186
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_015130387.2 → XP_014985873.1 E3 ubiquitin-protein ligase PDZRN3 isoform X5
- UniProtKB/TrEMBL
- A0A5F8A5K1, F7E7H7
- Related
- ENSMMUP00000016629.4, ENSMMUT00000017756.4
- Conserved Domains (1) summary
-
- cd00992
Location:77 → 145
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
XM_015130388.2 → XP_014985874.1 E3 ubiquitin-protein ligase PDZRN3 isoform X3
- UniProtKB/TrEMBL
-
A0A5F8A5K1
- Conserved Domains (2) summary
-
- cd00992
Location:137 → 205
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- cl00117
Location:20 → 53
- PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...