U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    NCBP1 nuclear cap binding protein subunit 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718256, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NCBP1provided by VGNC
    Official Full Name
    nuclear cap binding protein subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:75138
    See related
    Ensembl:ENSMMUG00000012281
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NCBP1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (45248068..45287133, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (41980456..42019525, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672759 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene uncharacterized LOC106993680 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene tropomodulin 1 Neighboring gene uncharacterized LOC114672760

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear cap binding complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear cap-binding protein subunit 1
    Names
    nuclear cap binding protein subunit 1, 80kDa

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      45248068..45287133 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835041.1 → XP_028690874.1  nuclear cap-binding protein subunit 1 isoform X5

      Conserved Domains (2) summary
      pfam09088
      Location:111 → 230
      MIF4G_like; MIF4G like
      pfam09090
      Location:245 → 519
      MIF4G_like_2; MIF4G like

    2. XM_028835038.1 → XP_028690871.1  nuclear cap-binding protein subunit 1 isoform X3

      Conserved Domains (2) summary
      pfam09088
      Location:161 → 280
      MIF4G_like; MIF4G like
      pfam09090
      Location:295 → 569
      MIF4G_like_2; MIF4G like

    3. XM_028835039.1 → XP_028690872.1  nuclear cap-binding protein subunit 1 isoform X3

      Conserved Domains (2) summary
      pfam09088
      Location:161 → 280
      MIF4G_like; MIF4G like
      pfam09090
      Location:295 → 569
      MIF4G_like_2; MIF4G like

    4. XM_015117233.2 → XP_014972719.1  nuclear cap-binding protein subunit 1 isoform X2

      UniProtKB/TrEMBL
      G7NEZ5
      Conserved Domains (3) summary
      smart00543
      Location:9 → 173
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam09088
      Location:284 → 403
      MIF4G_like; MIF4G like
      pfam09090
      Location:418 → 693
      MIF4G_like_2; MIF4G like

    5. XM_015117232.2 → XP_014972718.1  nuclear cap-binding protein subunit 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R216, G7NEZ5, H9FUT0
      Related
      ENSMMUP00000054350.2, ENSMMUT00000063629.2
      Conserved Domains (3) summary
      smart00543
      Location:28 → 240
      MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
      pfam09088
      Location:351 → 470
      MIF4G_like; MIF4G like
      pfam09090
      Location:485 → 760
      MIF4G_like_2; MIF4G like

    6. XM_028835040.1 → XP_028690873.1  nuclear cap-binding protein subunit 1 isoform X4

      Conserved Domains (2) summary
      pfam09088
      Location:151 → 270
      MIF4G_like; MIF4G like
      pfam09090
      Location:285 → 560
      MIF4G_like_2; MIF4G like
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.