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    UPF3B UPF3B regulator of nonsense mediated mRNA decay [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 694247, updated on 9-Nov-2023

    Summary

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    Gene symbol
    UPF3B
    Gene description
    UPF3B regulator of nonsense mediated mRNA decay
    See related
    Ensembl:ENSMMUG00000020222
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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    Genomic context

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    See UPF3B in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (116126184..116145128, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (113568139..113623890, complement)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene sosondowah ankyrin repeat domain family member D Neighboring gene small nucleolar RNA SNORA69 Neighboring gene ribosomal protein L39 Neighboring gene cyclin-I pseudogene Neighboring gene ring finger protein 113A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulator of nonsense transcripts 3B
    Names
    UPF3 regulator of nonsense transcripts homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266737.1 → NP_001253666.1  regulator of nonsense transcripts 3B

      See identical proteins and their annotated locations for NP_001253666.1

      Status: PROVISIONAL

      Source sequence(s)
      JV565007
      UniProtKB/TrEMBL
      F6V236, G7NRA7
      Related
      ENSMMUP00000026623.3, ENSMMUT00000028449.4
      Conserved Domains (1) summary
      cd12728
      Location:50 → 137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      116126184..116145128 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028841654.1 → XP_028697487.1  regulator of nonsense transcripts 3B isoform X3

      UniProtKB/TrEMBL
      A0A1D5QLZ5, G7NRA7
      Related
      ENSMMUP00000049070.2, ENSMMUT00000057884.2
      Conserved Domains (1) summary
      cl17169
      Location:50 → 132
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_028841653.1 → XP_028697486.1  regulator of nonsense transcripts 3B isoform X2

      UniProtKB/TrEMBL
      G7NRA7
      Conserved Domains (1) summary
      cl17169
      Location:50 → 132
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_015128096.2 → XP_014983582.1  regulator of nonsense transcripts 3B isoform X1

      UniProtKB/TrEMBL
      F6V224, G7NRA7
      Related
      ENSMMUP00000026624.3, ENSMMUT00000028450.4
      Conserved Domains (1) summary
      cd12728
      Location:50 → 137
      RRM_like_Smg4_UPF3B; RNA recognition motif-like Smg4_UPF3 domain in up-frameshift suppressor 3 homolog B on chromosome X (Upf3B)
    Nucleotide Protein
    Heading Accession and Version

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