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    RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717258, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RTCBprovided by VGNC
    Official Full Name
    RNA 2',3'-cyclic phosphate and 5'-OH ligaseprovided by VGNC
    Primary source
    VGNC:VGNC:77111
    Locus tag
    EGK_02972
    See related
    Ensembl:ENSMMUG00000006720
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C22orf28; C10H22orf28
    Orthologs
    human mouse all
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    Genomic context

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    See RTCB in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (19096161..19122161)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (74253360..74279345, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene synapsin III Neighboring gene TIMP metallopeptidase inhibitor 3 Neighboring gene F-box protein 7 Neighboring gene BPI fold containing family C Neighboring gene inositol polyphosphate multikinase-like Neighboring gene uncharacterized LOC114670369

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of tRNA-splicing ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-splicing ligase RtcB homolog
    Names
    tRNA-splicing ligase RtcB homolog
    NP_001181487.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194558.1 → NP_001181487.1  RNA-splicing ligase RtcB homolog

      See identical proteins and their annotated locations for NP_001181487.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000022
      UniProtKB/TrEMBL
      A0A8J8Y1J0, F7HFI7, G7N3P1
      Related
      ENSMMUP00000008846.2, ENSMMUT00000009413.4
      Conserved Domains (1) summary
      pfam01139
      Location:68 → 505
      RtcB; tRNA-splicing ligase RtcB

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      19096161..19122161
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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