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    PRPF38B pre-mRNA processing factor 38B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 695835, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PRPF38Bprovided by VGNC
    Official Full Name
    pre-mRNA processing factor 38Bprovided by VGNC
    Primary source
    VGNC:VGNC:82213
    Locus tag
    EGK_01031
    See related
    Ensembl:ENSMMUG00000010155
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PRPF38B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (115553000..115563928, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (109653869..109664184)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene AKNA domain containing 1 Neighboring gene uncharacterized LOC114671378 Neighboring gene syntaxin binding protein 3 Neighboring gene fibronectin type III domain containing 7 Neighboring gene HEN methyltransferase 1 Neighboring gene EEIG family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor 38B
    Names
    PRP38 pre-mRNA processing factor 38 domain containing B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      115553000..115563928 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015146394.2 → XP_015001880.1  pre-mRNA-splicing factor 38B isoform X1

      UniProtKB/TrEMBL
      A0A8J8XX64, F6QPW1, G7MIC3
      Related
      ENSMMUP00000013278.2, ENSMMUT00000014178.4
      Conserved Domains (1) summary
      pfam03371
      Location:47 → 227
      PRP38; PRP38 family

    2. XM_028830968.1 → XP_028686801.1  pre-mRNA-splicing factor 38B isoform X6

      Conserved Domains (2) summary
      TIGR01622
      Location:266 → 336
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 30
      PRP38; PRP38 family

    3. XM_028830957.1 → XP_028686790.1  pre-mRNA-splicing factor 38B isoform X5

      Conserved Domains (2) summary
      TIGR01622
      Location:279 → 349
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:7 → 43
      PRP38; PRP38 family

    4. XM_028830970.1 → XP_028686803.1  pre-mRNA-splicing factor 38B isoform X6

      Conserved Domains (2) summary
      TIGR01622
      Location:266 → 336
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 30
      PRP38; PRP38 family

    5. XM_028830952.1 → XP_028686785.1  pre-mRNA-splicing factor 38B isoform X4

      Conserved Domains (2) summary
      TIGR01622
      Location:281 → 351
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:4 → 45
      PRP38; PRP38 family

    6. XM_028830945.1 → XP_028686778.1  pre-mRNA-splicing factor 38B isoform X3

      Conserved Domains (2) summary
      TIGR01622
      Location:318 → 388
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 82
      PRP38; PRP38 family

    7. XM_028830974.1 → XP_028686807.1  pre-mRNA-splicing factor 38B isoform X6

      Conserved Domains (2) summary
      TIGR01622
      Location:266 → 336
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 30
      PRP38; PRP38 family

    8. XM_028830954.1 → XP_028686787.1  pre-mRNA-splicing factor 38B isoform X4

      Conserved Domains (2) summary
      TIGR01622
      Location:281 → 351
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:4 → 45
      PRP38; PRP38 family

    9. XM_028830944.1 → XP_028686777.1  pre-mRNA-splicing factor 38B isoform X2

      Conserved Domains (2) summary
      TIGR01622
      Location:352 → 433
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:15 → 116
      PRP38; PRP38 family

    10. XM_028830975.1 → XP_028686808.1  pre-mRNA-splicing factor 38B isoform X6

      Conserved Domains (2) summary
      TIGR01622
      Location:266 → 336
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 30
      PRP38; PRP38 family

    11. XM_028830955.1 → XP_028686788.1  pre-mRNA-splicing factor 38B isoform X4

      Conserved Domains (2) summary
      TIGR01622
      Location:281 → 351
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:4 → 45
      PRP38; PRP38 family

    12. XM_028830949.1 → XP_028686782.1  pre-mRNA-splicing factor 38B isoform X3

      Conserved Domains (2) summary
      TIGR01622
      Location:318 → 388
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 82
      PRP38; PRP38 family

    13. XM_028830977.1 → XP_028686810.1  pre-mRNA-splicing factor 38B isoform X6

      Conserved Domains (2) summary
      TIGR01622
      Location:266 → 336
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:1 → 30
      PRP38; PRP38 family

    14. XM_028830962.1 → XP_028686795.1  pre-mRNA-splicing factor 38B isoform X5

      Conserved Domains (2) summary
      TIGR01622
      Location:279 → 349
      SF-CC1; splicing factor, CC1-like family
      pfam03371
      Location:7 → 43
      PRP38; PRP38 family
    Nucleotide Protein
    Heading Accession and Version

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