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    Tex55 testis expressed 55 [ Mus musculus (house mouse) ]

    Gene ID: 74663, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tex55provided by MGI
    Official Full Name
    testis expressed 55provided by MGI
    Primary source
    MGI:MGI:1921913
    See related
    Ensembl:ENSMUSG00000022798 AllianceGenome:MGI:1921913
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TSCPA; 4930435E12Rik
    Summary
    Located in nucleus. Is expressed in ovary and testis. Orthologous to human TEX55 (testis expressed 55). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 28.2) See more
    Orthologs
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    Genomic context

    See Tex55 in Genome Data Viewer
    Location:
    16 26.87 cM; 16 B4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (38632566..38649134, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (38812204..38828772, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4 Neighboring gene RNA binding motif protein 39 pseudogene Neighboring gene uroplakin 1B Neighboring gene STARR-seq mESC enhancer starr_40835 Neighboring gene STARR-seq mESC enhancer starr_40836 Neighboring gene predicted gene 15802 Neighboring gene immunoglobulin superfamily, member 11 Neighboring gene predicted gene, 22500

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus  
    located_in nucleus PubMed 

    General protein information

    Preferred Names
    testis-specific expressed protein 55
    Names
    testis-specific conserved, cAMP dependent type PK anchoring protein
    testis-specific conserved, cAMP-dependent type II PK-anchoring protein
    uncharacterized protein C3orf30 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418951.1NP_001405880.1  testis-specific expressed protein 55 isoform 2

      Status: VALIDATED

      Source sequence(s)
      CT009576
    2. NM_029042.2NP_083318.1  testis-specific expressed protein 55 isoform 1

      Status: VALIDATED

      Source sequence(s)
      CT009576
      Consensus CDS
      CCDS49850.1
      UniProtKB/Swiss-Prot
      A4QMY3, A6X8Z9, Q8C5T0
      Related
      ENSMUSP00000113120.2, ENSMUST00000122078.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      38632566..38649134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522676.2XP_006522739.1  testis-specific expressed protein 55 isoform X2

      Conserved Domains (1) summary
      pfam17819
      Location:230346
      DUF5582; Family of unknown function (DUF5582)
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