U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Snhg10 small nucleolar RNA host gene 10 [ Mus musculus (house mouse) ]

    Gene ID: 69434, updated on 9-Dec-2024

    Summary

    Official Symbol
    Snhg10provided by MGI
    Official Full Name
    small nucleolar RNA host gene 10provided by MGI
    Primary source
    MGI:MGI:1916684
    See related
    AllianceGenome:MGI:1916684
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700026B20Rik
    Summary
    Orthologous to human SNHG10 (small nucleolar RNA host gene 10). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 3.5), CNS E18 (RPKM 2.7) and 27 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Snhg10 in Genome Data Viewer
    Location:
    12 E; 12 55.04 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (104996876..104998538, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (105030617..105032279, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene calmin Neighboring gene predicted gene, 53761 Neighboring gene STARR-seq mESC enhancer starr_33155 Neighboring gene spectrin repeat containing, nuclear envelope family member 3 Neighboring gene STARR-positive B cell enhancer ABC_E1453 Neighboring gene STARR-seq mESC enhancer starr_33158 Neighboring gene CapStarr-seq enhancer MGSCv37_chr12:106251266-106251483 Neighboring gene predicted gene, 31742 Neighboring gene STARR-positive B cell enhancer ABC_E7177 Neighboring gene small Cajal body-specific RNA 13 Neighboring gene microRNA 3069 Neighboring gene predicted gene, 46374 Neighboring gene glutaredoxin 5 Neighboring gene predicted gene, 31884

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Other Names

    • small nucleolar RNA host gene (non-protein coding) 10

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component  

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003145.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK006372, BX524976

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      104996876..104998538 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.