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    DANT2 DXZ4 associated non-coding transcript 2, distal [ Homo sapiens (human) ]

    Gene ID: 642776, updated on 10-Dec-2024

    Summary

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    Official Symbol
    DANT2provided by HGNC
    Official Full Name
    DXZ4 associated non-coding transcript 2, distalprovided by HGNC
    Primary source
    HGNC:HGNC:50862
    See related
    Ensembl:ENSG00000235244 MIM:301004; AllianceGenome:HGNC:50862
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See DANT2 in Genome Data Viewer
    Location:
    Xq23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (115840396..115969111, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (114956729..115085444, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:114953159-114953672 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene 5 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:114971507-114972076 Neighboring gene SUMO2 pseudogene 21 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:114957011-114957610 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:114957611-114958209 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:114983330-114983960 Neighboring gene DXZ4 associated non-coding transcript 1, proximal Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:114999239-114999784 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:115003482-115004005 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:115004006-115004528 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:115005053-115005575 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:115004529-115005052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:115009227-115009726 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29865 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:115017017-115017518 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:115057053-115057566 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:115076570-115077070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:115082956-115083533 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:115083534-115084110 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:115099695-115100571 Neighboring gene RNA, 7SL, cytoplasmic 712, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29867 Neighboring gene aldo-keto reductase family 1 member B1 pseudogene 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Two novel DXZ4-associated long noncoding RNAs show developmental changes in expression coincident with heterochromatin formation at the human (Homo sapiens) macrosatellite repeat. Figueroa DM, et al. Chromosome Res, 2015 Dec. PMID 26188586, Free PMC Article
    2. The DNA sequence and biological annotation of human chromosome 1. Gregory SG, et al. Nature, 2006 May 18. PMID 16710414
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    Other Names

    • DXZ4 associated noncoding transcript 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_130730.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL772226, BC003645, BX642309
      Related
      ENST00000430756.3

    2. NR_132337.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two exons and includes one alternate exon, compared to variant 1.
      Source sequence(s)
      BM925596, BX642309, CR753863

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      115840396..115969111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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