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    Hsfy2 heat shock transcription factor, Y linked 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316409, updated on 27-Dec-2024

    Summary

    Official Symbol
    Hsfy2provided by RGD
    Official Full Name
    heat shock transcription factor, Y linked 2provided by RGD
    Primary source
    RGD:1311885
    See related
    EnsemblRapid:ENSRNOG00000038569 AllianceGenome:RGD:1311885
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Hsfy1
    Summary
    Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to be located in cytosol and nucleoplasm. Orthologous to several human genes including HSFY2 (heat shock transcription factor Y-linked 2). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Hsfy2 in Genome Data Viewer
    Location:
    9q31
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (65676744..65678157, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (58182415..58183828, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (63289937..63291350, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene phospholipase C-like 1 Neighboring gene uncharacterized LOC108351933 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene U7 small nuclear RNA Neighboring gene SATB homeobox 2 Neighboring gene uncharacterized LOC102549320

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables sequence-specific double-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    heat shock transcription factor, Y linked 2
    Names
    heat shock transcription factor, Y-linked 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012132.1NP_001012132.1  heat shock transcription factor, Y linked 2

      See identical proteins and their annotated locations for NP_001012132.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083618
      UniProtKB/TrEMBL
      F7EQV5, Q5XIQ7
      Related
      ENSRNOP00000055621.1, ENSRNOT00000058831.4
      Conserved Domains (1) summary
      pfam00447
      Location:81195
      HSF_DNA-bind; HSF-type DNA-binding

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      65676744..65678157 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)