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    TJAP1 tight junction associated protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 515620, updated on 27-Dec-2024

    Summary

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    Official Symbol
    TJAP1provided by VGNC
    Official Full Name
    tight junction associated protein 1provided by VGNC
    Primary source
    VGNC:VGNC:35880
    See related
    BGD:BT16394; Ensembl:ENSBTAG00000011189
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See TJAP1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (17028430..17052407)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily C member 10 Neighboring gene uncharacterized LOC132343619 Neighboring gene delta like non-canonical Notch ligand 2 Neighboring gene leucine rich repeat containing 73 Neighboring gene Yip1 domain family member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tight junction-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192419.1 → NP_001179348.1  tight junction-associated protein 1

      See identical proteins and their annotated locations for NP_001179348.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000023
      UniProtKB/TrEMBL
      E1BFM9
      Related
      ENSBTAP00000035843.3, ENSBTAT00000035977.5
      Conserved Domains (2) summary
      pfam15453
      Location:276 → 547
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:17 → 158
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      17028430..17052407
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015459797.2 → XP_015315283.1  tight junction-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M4E6
      Conserved Domains (2) summary
      pfam15453
      Location:286 → 557
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:13 → 168
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_024983583.2 → XP_024839351.1  tight junction-associated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M4E6
      Conserved Domains (2) summary
      pfam15453
      Location:286 → 557
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:13 → 168
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_005223429.4 → XP_005223486.1  tight junction-associated protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005223486.1

      UniProtKB/TrEMBL
      A0A3Q1M4E6
      Conserved Domains (2) summary
      pfam15453
      Location:286 → 557
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:13 → 168
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_010818189.3 → XP_010816491.1  tight junction-associated protein 1 isoform X1

      See identical proteins and their annotated locations for XP_010816491.1

      UniProtKB/TrEMBL
      A0A3Q1M4E6
      Conserved Domains (2) summary
      pfam15453
      Location:286 → 557
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:13 → 168
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_024983592.2 → XP_024839360.1  tight junction-associated protein 1 isoform X2

      UniProtKB/TrEMBL
      E1BFM9
      Conserved Domains (2) summary
      pfam15453
      Location:276 → 547
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:17 → 158
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_005223430.4 → XP_005223487.1  tight junction-associated protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005223487.1

      UniProtKB/TrEMBL
      A0A3Q1M4E6
      Related
      ENSBTAP00000065080.1, ENSBTAT00000071156.2
      Conserved Domains (2) summary
      pfam15453
      Location:286 → 557
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:13 → 168
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_005223431.4 → XP_005223488.1  tight junction-associated protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005223488.1

      UniProtKB/TrEMBL
      A0A3Q1M4E6
      Conserved Domains (2) summary
      pfam15453
      Location:286 → 557
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:13 → 168
      SMC_N; RecF/RecN/SMC N terminal domain

    8. XM_005223433.5 → XP_005223490.1  tight junction-associated protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005223490.1

      UniProtKB/TrEMBL
      E1BFM9
      Conserved Domains (2) summary
      pfam15453
      Location:276 → 547
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:17 → 158
      SMC_N; RecF/RecN/SMC N terminal domain

    9. XM_005223434.5 → XP_005223491.1  tight junction-associated protein 1 isoform X2

      See identical proteins and their annotated locations for XP_005223491.1

      UniProtKB/TrEMBL
      E1BFM9
      Conserved Domains (2) summary
      pfam15453
      Location:276 → 547
      Pilt; Protein incorporated later into Tight Junctions
      cl25732
      Location:17 → 158
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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