U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CSKMT citrate synthase lysine methyltransferase [ Bos taurus (domestic cattle) ]

    Gene ID: 512401, updated on 28-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CSKMTprovided by VGNC
    Official Full Name
    citrate synthase lysine methyltransferaseprovided by VGNC
    Primary source
    VGNC:VGNC:31402
    See related
    BGD:BT28553; Ensembl:ENSBTAG00000022293
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    METTL12
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CSKMT in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (40570053..40997813)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene bestrophin 1 Neighboring gene ferritin heavy chain 1 Neighboring gene uncharacterized LOC107131971 Neighboring gene inner centromere protein Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene secretoglobin, family 1D, member 2 Neighboring gene secretoglobin, family 2A, member 2 Neighboring gene uncharacterized LOC101907613 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene asparaginase and isoaspartyl peptidase 1 Neighboring gene secretoglobin family 1A member 1 Neighboring gene AHNAK nucleoprotein Neighboring gene uncharacterized LOC132344205 Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene eukaryotic translation elongation factor 1 gamma Neighboring gene terminal uridylyl transferase 1, U6 snRNA-specific Neighboring gene small nucleolar RNA SNORA57 Neighboring gene chromosome 29 C11orf98 homolog Neighboring gene metastasis associated 1 family member 2 Neighboring gene beta-1,3-glucuronyltransferase 3 Neighboring gene EMAP like 3 Neighboring gene retinal outer segment membrane protein 1 Neighboring gene glucosidase II alpha subunit Neighboring gene integrator complex subunit 5 Neighboring gene LBH domain containing 1 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial
    Names
    methyltransferase like 12
    NP_001179249.1
    XP_005226967.1
    XP_015316724.1
    XP_024842837.2
    XP_059738841.1
    XP_059738842.1
    XP_059738843.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192320.1 → NP_001179249.1  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial

      See identical proteins and their annotated locations for NP_001179249.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000029
      UniProtKB/TrEMBL
      A0A3Q1MW24, E1BE08
      Related
      ENSBTAP00000030119.4, ENSBTAT00000030134.5
      Conserved Domains (1) summary
      cl17173
      Location:78 → 207
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      40570053..40997813
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882858.1 → XP_059738841.1  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X2

      UniProtKB/TrEMBL
      A0AAA9SI34

    2. XM_024987069.2 → XP_024842837.2  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0AAA9SD21, A0AAA9SI34
      Related
      ENSBTAP00000080214.1, ENSBTAT00000112868.1

    3. XM_059882860.1 → XP_059738843.1  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MW24, E1BE08

    4. XM_059882859.1 → XP_059738842.1  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MW24, E1BE08

    5. XM_015461238.3 → XP_015316724.1  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MW24, E1BE08
      Conserved Domains (1) summary
      cl17173
      Location:78 → 207
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    6. XM_005226910.5 → XP_005226967.1  citrate synthase-lysine N-methyltransferase CSKMT, mitochondrial isoform X3

      See identical proteins and their annotated locations for XP_005226967.1

      UniProtKB/TrEMBL
      A0A3Q1MW24, E1BE08
      Conserved Domains (1) summary
      cl17173
      Location:78 → 207
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.