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    NIFK nucleolar protein interacting with the FHA domain of MKI67 [ Bos taurus (domestic cattle) ]

    Gene ID: 509598, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NIFKprovided by VGNC
    Official Full Name
    nucleolar protein interacting with the FHA domain of MKI67provided by VGNC
    Primary source
    VGNC:VGNC:32076
    See related
    BGD:BT14446; Ensembl:ENSBTAG00000019387
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    MKI67IP
    Orthologs
    human mouse all
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    Genomic context

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    See NIFK in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (73387415..73397882, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene transcription factor CP2 like 1 Neighboring gene cytoplasmic linker associated protein 1 Neighboring gene U4atac minor spliceosomal RNA Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene translin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC127116

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MKI67 FHA domain-interacting nucleolar phosphoprotein
    Names
    MKI67 (FHA domain) interacting nucleolar phosphoprotein
    nucleolar phosphoprotein Nopp34
    nucleolar protein interacting with the FHA domain of pKI-67

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034354.2 → NP_001029526.1  MKI67 FHA domain-interacting nucleolar phosphoprotein

      See identical proteins and their annotated locations for NP_001029526.1

      Status: PROVISIONAL

      Source sequence(s)
      BC102791
      UniProtKB/Swiss-Prot
      Q3SZM1
      UniProtKB/TrEMBL
      A0AAA9TQG7
      Related
      ENSBTAP00000100613.1, ENSBTAT00000122299.1
      Conserved Domains (3) summary
      COG0724
      Location:37 → 125
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12307
      Location:46 → 119
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins
      pfam12196
      Location:231 → 269
      hNIFK_binding; FHA Ki67 binding domain of hNIFK

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      73387415..73397882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059892763.1 → XP_059748746.1  MKI67 FHA domain-interacting nucleolar phosphoprotein isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3SZM1.1 GenPept UniProtKB/Swiss-Prot:Q3SZM1

    Gene LinkOut

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