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    RIMKLB ribosomal modification protein rimK like family member B [ Bos taurus (domestic cattle) ]

    Gene ID: 538579, updated on 30-Jan-2025

    Summary

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    Official Symbol
    RIMKLBprovided by VGNC
    Official Full Name
    ribosomal modification protein rimK like family member Bprovided by VGNC
    Primary source
    VGNC:VGNC:33971
    See related
    BGD:BT13621; EnsemblRapid:ENSBTAG00070032787
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    NAAGS; FAM80B
    Orthologs
    human mouse all
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    Genomic context

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    See RIMKLB in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (101116665..101164355, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene polyhomeotic homolog 1 Neighboring gene alpha-2-macroglobulin like 1 Neighboring gene microRNA mir-2284r Neighboring gene basic proline-rich protein-like Neighboring gene microfibril associated protein 5 Neighboring gene transfer RNA glutamic acid (anticodon UUC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of N-acetylaspartylglutamate synthetase. Becker I, et al. J Biol Chem, 2010 Sep 17. PMID 20643647, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC142528

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables N-acetyl-L-aspartate-L-glutamate ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-citrylglutamate synthase B
    Names
    N-acetyl-aspartyl-glutamate synthetase B
    N-acetyl-aspartylglutamate synthetase B
    N-acetylaspartyl-glutamate synthetase B
    NAAG synthetase B
    beta-citryl-glutamate synthase B
    family with sequence similarity 80, member B
    ribosomal protein S6 modification-like protein B
    NP_001069581.1
    XP_005207126.1
    XP_015326759.1
    XP_024847743.1
    XP_024847744.1
    XP_024847745.1
    XP_024847746.1
    XP_059742577.1
    XP_059742578.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076113.2 → NP_001069581.1  beta-citrylglutamate synthase B

      See identical proteins and their annotated locations for NP_001069581.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120203
      UniProtKB/Swiss-Prot
      Q0VCE9
      Related
      ENSBTAP00070045091.1, ENSBTAT00070074013.1
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      101116665..101164355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015471273.3 → XP_015326759.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    2. XM_024991977.2 → XP_024847745.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    3. XM_024991976.2 → XP_024847744.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    4. XM_024991975.2 → XP_024847743.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    5. XM_059886595.1 → XP_059742578.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9

    6. XM_005207069.5 → XP_005207126.1  beta-citrylglutamate synthase B isoform X1

      See identical proteins and their annotated locations for XP_005207126.1

      UniProtKB/Swiss-Prot
      Q0VCE9
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    7. XM_024991978.2 → XP_024847746.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9
      Conserved Domains (1) summary
      TIGR00768
      Location:8 → 303
      rimK_fam; alpha-L-glutamate ligase, RimK family

    8. XM_059886594.1 → XP_059742577.1  beta-citrylglutamate synthase B isoform X1

      UniProtKB/Swiss-Prot
      Q0VCE9
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VCE9.1 GenPept UniProtKB/Swiss-Prot:Q0VCE9

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