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    RRP36 ribosomal RNA processing 36 [ Bos taurus (domestic cattle) ]

    Gene ID: 100125879, updated on 27-Dec-2024

    Summary

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    Official Symbol
    RRP36provided by VGNC
    Official Full Name
    ribosomal RNA processing 36provided by VGNC
    Primary source
    VGNC:VGNC:106905
    See related
    BGD:BT15111
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C23H6orf153
    Orthologs
    human mouse all
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    Genomic context

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    See RRP36 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (16661624..16665997)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B'delta Neighboring gene male-enhanced antigen 1 Neighboring gene kelch domain containing 3 Neighboring gene cullin 7 Neighboring gene mitochondrial ribosomal protein L2 Neighboring gene kinesin light chain 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139601

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosomal RNA processing protein 36 homolog
    Names
    ribosomal RNA processing 36 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105479.1 → NP_001098949.1  ribosomal RNA processing protein 36 homolog

      See identical proteins and their annotated locations for NP_001098949.1

      Status: PROVISIONAL

      Source sequence(s)
      BC148959
      UniProtKB/Swiss-Prot
      A6QNR1
      Conserved Domains (1) summary
      pfam06102
      Location:78 → 232
      DUF947; Domain of unknown function (DUF947)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      16661624..16665997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QNR1.1 GenPept UniProtKB/Swiss-Prot:A6QNR1

    Gene LinkOut

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