UTP4 UTP4 small subunit processome component [Bos taurus (domestic cattle)] - Gene

Summary

Official Symbol: UTP4provided by VGNC
Official Full Name: UTP4 small subunit processome componentprovided by VGNC
Primary source: VGNC:VGNC:36747
See related: BGD:BT25711; Ensembl:ENSBTAG00000006347
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Bos taurus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as: CIRH1A
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
RS_2024_12	current	ARS-UCD2.0 (GCF_002263795.3)	18	NC_037345.1 (36343457..36373610)

Chromosome 18 - NC_037345.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Dominette sequence data
BioProject: PRJNA294306
Analysis date: Tue Dec 17 08:57:05 2024

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of 90S preribosome	IEA Inferred from Electronic Annotation more info	PubMed
part_of small-subunit processome	IEA Inferred from Electronic Annotation more info	PubMed
part_of t-UTP complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: U3 small nucleolar RNA-associated protein 4 homolog

Names: cirrhosis, autosomal recessive 1A (cirhin)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001205672.1 → NP_001192601.1 U3 small nucleolar RNA-associated protein 4 homolog

See identical proteins and their annotated locations for NP_001192601.1

Status: PROVISIONAL

Source sequence(s)

NKLS02000018

UniProtKB/TrEMBL

A0AAA9RV48

Related

ENSBTAP00000008333.6, ENSBTAT00000008333.6

Conserved Domains (3) summary

COG2319
Location:17 → 324

WD40; WD40 repeat [General function prediction only]

sd00039
Location:20 → 57

7WD40; WD40 repeat [structural motif]

cl02567
Location:16 → 306

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...