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    JMJD4 jumonji domain containing 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 506151, updated on 1-Jan-2025

    Summary

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    Official Symbol
    JMJD4provided by VGNC
    Official Full Name
    jumonji domain containing 4provided by VGNC
    Primary source
    VGNC:VGNC:54440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See JMJD4 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (3469603..3474816)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS12-like Neighboring gene synaptosome associated protein 47 Neighboring gene zinc finger protein 93 Neighboring gene vomeronasal 2 receptor 401 pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2-oxoglutarate-dependent dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    jmjC domain-containing protein 4; 2-oxoglutarate and iron-dependent oxygenase JMJD4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      3469603..3474816
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059888496.1 → XP_059744479.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X3

    2. XM_002688513.7 → XP_002688559.4  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

      Conserved Domains (1) summary
      cl21464
      Location:43 → 285
      cupin_like; Conserved domain found in cupin and related proteins

    3. XM_015471859.3 → XP_015327345.2  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X2

      Conserved Domains (1) summary
      cl21464
      Location:43 → 273
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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