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    IFITM1 interferon induced transmembrane protein 1 (9-27) [ Bos taurus (domestic cattle) ]

    Gene ID: 353510, updated on 27-Dec-2024

    Summary

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    Gene symbol
    IFITM1
    Gene description
    interferon induced transmembrane protein 1 (9-27)
    See related
    BGD:BT15013
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Annotation information
    Annotation category: suggests misassembly
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    Genomic context

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    See IFITM1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (50933708..50934839, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene beta-1,4-N-acetyl-galactosaminyltransferase 4 Neighboring gene interferon induced transmembrane protein 3 Neighboring gene interferon-induced transmembrane protein 1 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Pregnancy and interferon-tau upregulate gene expression of members of the 1-8 family in the bovine uterus. Pru JK, et al. Biol Reprod, 2001 Nov. PMID 11673264
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC152184, MGC159565

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of viral entry into host cell IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of viral genome replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to interferon-alpha IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to interferon-beta IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to type II interferon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in type I interferon-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interferon-induced transmembrane protein 1 (9-27)
    Names
    interferon-induced membrane protein Leu-13/9-27

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078142.2 → NP_001071610.1  interferon-induced transmembrane protein 1 (9-27)

      See identical proteins and their annotated locations for NP_001071610.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120479
      UniProtKB/TrEMBL
      A0AAA9SBF7, Q0P559, Q95MQ2
      Conserved Domains (1) summary
      pfam04505
      Location:34 → 98
      CD225; Interferon-induced transmembrane protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50933708..50934839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials