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    ERI1 exoribonuclease 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 540728, updated on 27-Dec-2024

    Summary

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    Gene symbol
    ERI1
    Gene description
    exoribonuclease 1
    See related
    BGD:BT16710; Ensembl:ENSBTAG00000009685
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    THEX1
    Orthologs
    human mouse all
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    Genomic context

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    See ERI1 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 27 NC_037354.1 (25061602..25078779)

    Chromosome 27 - NC_037354.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132344055 Neighboring gene uncharacterized LOC101904042 Neighboring gene uncharacterized LOC104976076 Neighboring gene protein phosphatase 1 regulatory subunit 3B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037354.1 Chromosome 27 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC134299

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3'-5'-RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3'-5' exoribonuclease 1
    Names
    histone mRNA 3' end-specific exonuclease
    three prime histone mRNA exonuclease 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038192.2 → NP_001033281.1  3'-5' exoribonuclease 1

      See identical proteins and their annotated locations for NP_001033281.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109681
      UniProtKB/TrEMBL
      A7E3P7, Q32LA2
      Related
      ENSBTAP00000012775.2, ENSBTAT00000012775.4
      Conserved Domains (2) summary
      cd06133
      Location:130 → 310
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam02037
      Location:76 → 110
      SAP; SAP domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037354.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25061602..25078779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010820293.3 → XP_010818595.1  3'-5' exoribonuclease 1 isoform X1

      See identical proteins and their annotated locations for XP_010818595.1

      UniProtKB/TrEMBL
      A0A3Q1N4V3, A7E3P7
      Related
      ENSBTAP00000064907.1, ENSBTAT00000066410.2
      Conserved Domains (2) summary
      cd06133
      Location:130 → 282
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam02037
      Location:76 → 110
      SAP; SAP domain

    2. XM_059882254.1 → XP_059738237.1  3'-5' exoribonuclease 1 isoform X2

    3. XM_024986302.2 → XP_024842070.1  3'-5' exoribonuclease 1 isoform X2

      Conserved Domains (2) summary
      cd06133
      Location:52 → 232
      ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
      pfam02037
      Location:1 → 32
      SAP; SAP domain
    Nucleotide Protein Strain
    Heading Accession and Version

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