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    USHBP1 USH1 protein network component harmonin binding protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 768083, updated on 1-Jan-2025

    Summary

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    Official Symbol
    USHBP1provided by VGNC
    Official Full Name
    USH1 protein network component harmonin binding protein 1provided by VGNC
    Primary source
    VGNC:VGNC:36707
    See related
    BGD:BT14244; Ensembl:ENSBTAG00000015108
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See USHBP1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (5846746..5855773)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and LEM domain containing 1 Neighboring gene BRISC and BRCA1 A complex member 1 Neighboring gene uncharacterized LOC132345677 Neighboring gene nuclear receptor subfamily 2 group F member 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139874

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of canonical Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    harmonin-binding protein USHBP1
    Names
    Usher syndrome 1C binding protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077137.1 → NP_001070605.1  harmonin-binding protein USHBP1

      See identical proteins and their annotated locations for NP_001070605.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123505
      UniProtKB/TrEMBL
      F1MXE5, Q08DY7
      Related
      ENSBTAP00000020104.6, ENSBTAT00000020104.7
      Conserved Domains (2) summary
      pfam10506
      Location:294 → 358
      MCC-bdg_PDZ; PDZ domain of MCC-2 bdg protein for Usher syndrome
      cl25732
      Location:471 → 682
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      5846746..5855773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005208528.5 → XP_005208585.2  harmonin-binding protein USHBP1 isoform X1

      UniProtKB/TrEMBL
      F1MXE5, Q08DY7
      Conserved Domains (2) summary
      pfam10506
      Location:294 → 358
      MCC-bdg_PDZ; PDZ domain of MCC-2 bdg protein for Usher syndrome
      cl25732
      Location:471 → 682
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_005208529.5 → XP_005208586.2  harmonin-binding protein USHBP1 isoform X1

      UniProtKB/TrEMBL
      F1MXE5, Q08DY7
      Conserved Domains (2) summary
      pfam10506
      Location:294 → 358
      MCC-bdg_PDZ; PDZ domain of MCC-2 bdg protein for Usher syndrome
      cl25732
      Location:471 → 682
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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