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    GTF2E2 general transcription factor IIE subunit 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 510921, updated on 1-Jan-2025

    Summary

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    Official Symbol
    GTF2E2provided by VGNC
    Official Full Name
    general transcription factor IIE subunit 2provided by VGNC
    Primary source
    VGNC:VGNC:29694
    See related
    BGD:BT23226; Ensembl:ENSBTAG00000012691
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See GTF2E2 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 27 NC_037354.1 (26703211..26783526, complement)

    Chromosome 27 - NC_037354.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene microRNA mir-2399 Neighboring gene small integral membrane protein 18 Neighboring gene glutathione-disulfide reductase Neighboring gene large ribosomal subunit protein uL24-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037354.1 Chromosome 27 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC127990

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables TFIIH-class transcription factor complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIIE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    general transcription factor IIE subunit 2
    Names
    TFIIE-beta
    general transcription factor IIE, polypeptide 2, beta 34kDa
    transcription initiation factor IIE subunit beta

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046065.2 → NP_001039530.1  general transcription factor IIE subunit 2

      See identical proteins and their annotated locations for NP_001039530.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105362
      UniProtKB/Swiss-Prot
      Q2KJF9
      Related
      ENSBTAP00000016863.3, ENSBTAT00000016863.4
      Conserved Domains (1) summary
      cd07977
      Location:66 → 144
      TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037354.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      26703211..26783526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024986232.2 → XP_024842000.1  general transcription factor IIE subunit 2 isoform X1

      Conserved Domains (1) summary
      cd07977
      Location:66 → 144
      TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KJF9.1 GenPept UniProtKB/Swiss-Prot:Q2KJF9

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