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    NXF1 nuclear RNA export factor 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 512136, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NXF1provided by VGNC
    Official Full Name
    nuclear RNA export factor 1provided by VGNC
    Primary source
    VGNC:VGNC:32375
    See related
    BGD:BT14729; Ensembl:ENSBTAG00000009488
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NXF1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (41099477..41110792, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor 6 like Neighboring gene transmembrane protein 179B Neighboring gene transmembrane protein 223 Neighboring gene syntaxin 5 Neighboring gene testis expressed 54

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear RNA export factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075555.1 → NP_001069023.1  nuclear RNA export factor 1

      See identical proteins and their annotated locations for NP_001069023.1

      Status: PROVISIONAL

      Source sequence(s)
      BC114739
      UniProtKB/Swiss-Prot
      Q1RMS5
      UniProtKB/TrEMBL
      A0A452DIA3
      Related
      ENSBTAP00000056842.1, ENSBTAT00000077484.2
      Conserved Domains (7) summary
      smart00804
      Location:557 → 619
      TAP_C; C-terminal domain of vertebrate Tap protein
      cd00116
      Location:207 → 353
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      cd00780
      Location:383 → 539
      NTF2; Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many ...
      sd00035
      Location:225 → 267
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam09162
      Location:117 → 184
      Tap-RNA_bind; Tap, RNA-binding
      pfam12799
      Location:292 → 330
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:266 → 326
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      41099477..41110792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059882856.1 → XP_059738839.1  nuclear RNA export factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A452DIA3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1RMS5.1 GenPept UniProtKB/Swiss-Prot:Q1RMS5

    Gene LinkOut

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