U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    EXOSC4 exosome component 4 [ Bos taurus (domestic cattle) ]

    Gene ID: 618292, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EXOSC4provided by VGNC
    Official Full Name
    exosome component 4provided by VGNC
    Primary source
    VGNC:VGNC:28659
    See related
    BGD:BT23445; Ensembl:ENSBTAG00000014607
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    RRP41
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EXOSC4 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (755134..757010, complement)

    Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene cytochrome c1 Neighboring gene uncharacterized LOC107133095 Neighboring gene glycosylphosphatidylinositol anchor attachment 1 Neighboring gene 5-oxoprolinase, ATP-hydrolysing Neighboring gene sphingomyelin phosphodiesterase 5 Neighboring gene spermatogenesis and centriole associated 1 Neighboring gene transfer RNA glycine (anticodon UCC)

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Assessment of the gene content of the chromosomal regions flanking bovine DGAT1. Winter A, et al. Genomics, 2004 Jan. PMID 14667821
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in U4 snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear mRNA surveillance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in poly(A)-dependent snoRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear exosome (RNase complex) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    exosome complex component RRP41
    Names
    exosome complex exonuclease RRP41
    ribosomal RNA processing protein 41

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078086.2 → NP_001071554.1  exosome complex component RRP41

      See identical proteins and their annotated locations for NP_001071554.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109819
      UniProtKB/Swiss-Prot
      Q7YRA3
      Related
      ENSBTAP00000019451.3, ENSBTAT00000019451.4
      Conserved Domains (2) summary
      cd11370
      Location:11 → 237
      RNase_PH_RRP41; RRP41 subunit of eukaryotic exosome
      PRK03983
      Location:1 → 225
      PRK03983; exosome complex exonuclease Rrp41; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      755134..757010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7YRA3.3 GenPept UniProtKB/Swiss-Prot:Q7YRA3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.