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    NUP93 nucleoporin 93 [ Bos taurus (domestic cattle) ]

    Gene ID: 510004, updated on 27-Dec-2024

    Summary

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    Official Symbol
    NUP93provided by VGNC
    Official Full Name
    nucleoporin 93provided by VGNC
    Primary source
    VGNC:VGNC:32366
    See related
    BGD:BT26648; Ensembl:ENSBTAG00000006611
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NUP93 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (24796037..24898993)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene retinyl ester hydrolase type 1 Neighboring gene polyadenylate-binding protein 2-like Neighboring gene microRNA mir-138-2 Neighboring gene solute carrier family 12 member 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC157081

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in poly(A)+ mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear pore complex protein Nup93
    Names
    93 kDa nucleoporin
    Nucleoporin Nup93

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098921.1 → NP_001092391.1  nuclear pore complex protein Nup93

      See identical proteins and their annotated locations for NP_001092391.1

      Status: PROVISIONAL

      Source sequence(s)
      BC142296
      UniProtKB/Swiss-Prot
      A5PJZ5
      UniProtKB/TrEMBL
      A0AAF7AF06
      Related
      ENSBTAP00000008683.4, ENSBTAT00000008683.5
      Conserved Domains (1) summary
      pfam04097
      Location:219 → 802
      Nic96; Nup93/Nic96

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24796037..24898993
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059876612.1 → XP_059732595.1  nuclear pore complex protein Nup93 isoform X1

      UniProtKB/Swiss-Prot
      A5PJZ5
      UniProtKB/TrEMBL
      A0AAF7AF06

    2. XM_005218523.5 → XP_005218580.1  nuclear pore complex protein Nup93 isoform X2

      UniProtKB/TrEMBL
      A0AAF7AF06
      Conserved Domains (1) summary
      pfam04097
      Location:219 → 790
      Nic96; Nup93/Nic96
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A5PJZ5.1 GenPept UniProtKB/Swiss-Prot:A5PJZ5

    Gene LinkOut

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