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    VPS52 VPS52 subunit of GARP complex [ Bos taurus (domestic cattle) ]

    Gene ID: 511364, updated on 27-Dec-2024

    Summary

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    Official Symbol
    VPS52provided by VGNC
    Official Full Name
    VPS52 subunit of GARP complexprovided by VGNC
    Primary source
    VGNC:VGNC:36828
    See related
    BGD:BT27545; Ensembl:ENSBTAG00000002643
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See VPS52 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (7428093..7446221, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 1 Neighboring gene HIV Tat-specific factor 1 homolog Neighboring gene transfer RNA glycine (anticodon CCC) Neighboring gene ribosomal protein S18 Neighboring gene beta-1,3-galactosyltransferase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytic recycling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 52 homolog
    Names
    VPS52, GARP complex subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193060.1 → NP_001179989.1  vacuolar protein sorting-associated protein 52 homolog

      See identical proteins and their annotated locations for NP_001179989.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000023
      UniProtKB/TrEMBL
      A0A3Q1MJR9
      Related
      ENSBTAP00000069431.2, ENSBTAT00000076838.2
      Conserved Domains (1) summary
      pfam04129
      Location:94 → 601
      Vps52; Vps52 / Sac2 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7428093..7446221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059880293.1 → XP_059736276.1  vacuolar protein sorting-associated protein 52 homolog isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MJR9

    2. XM_005223235.3 → XP_005223292.1  vacuolar protein sorting-associated protein 52 homolog isoform X2

      See identical proteins and their annotated locations for XP_005223292.1

      UniProtKB/TrEMBL
      A0A3Q1MJR9
      Conserved Domains (1) summary
      pfam04129
      Location:1 → 476
      Vps52; Vps52 / Sac2 family

    3. XM_005223232.5 → XP_005223289.1  vacuolar protein sorting-associated protein 52 homolog isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MJR9, E1BDC9
      Related
      ENSBTAP00000003427.6, ENSBTAT00000003427.7
      Conserved Domains (1) summary
      pfam04129
      Location:94 → 601
      Vps52; Vps52 / Sac2 family
    Nucleotide Protein Strain
    Heading Accession and Version

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