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    LINC00317 long intergenic non-protein coding RNA 317 [ Homo sapiens (human) ]

    Gene ID: 378828, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC00317provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 317provided by HGNC
    Primary source
    HGNC:HGNC:23126
    See related
    Ensembl:ENSG00000238265 AllianceGenome:HGNC:23126
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PRED89; C21orf117; NCRNA00317
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    Genomic context

    See LINC00317 in Genome Data Viewer
    Location:
    21q21.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (21723293..21737319, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (20089389..20103412, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (23095613..23109639, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905057 Neighboring gene neural cell adhesion molecule 2 Neighboring gene Sharpr-MPRA regulatory region 4841 Neighboring gene Sharpr-MPRA regulatory region 4883 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:22737134-22737706 Neighboring gene long intergenic non-protein coding RNA 1425 Neighboring gene MPRA-validated peak4378 silencer Neighboring gene MPRA-validated peak4379 silencer Neighboring gene Sharpr-MPRA regulatory region 9223 Neighboring gene long intergenic non-protein coding RNA 1687 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:23448619-23449219

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038872.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC009878, BF026848
      Related
      ENST00000419069.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      21723293..21737319 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      20089389..20103412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)