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    EPHA5-AS1 EPHA5 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100144602, updated on 10-Dec-2024

    Summary

    Official Symbol
    EPHA5-AS1provided by HGNC
    Official Full Name
    EPHA5 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:50602
    See related
    Ensembl:ENSG00000250846 AllianceGenome:HGNC:50602
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in brain (RPKM 2.9), prostate (RPKM 1.1) and 5 other tissues See more
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    Genomic context

    See EPHA5-AS1 in Genome Data Viewer
    Location:
    4q13.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (65669961..65693386)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (69108316..69131754)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (66535679..66559104)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:66106913-66107790 Neighboring gene uncharacterized LOC124900852 Neighboring gene EPH receptor A5 Neighboring gene ribosomal protein L6 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:66533825-66534356 Neighboring gene uncharacterized LOC105377258 Neighboring gene RNA, U2 small nuclear 40, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    General gene information

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034138.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC104137, BC017721
      Related
      ENST00000509473.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      65669961..65693386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      69108316..69131754
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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