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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029041.1 RefSeqGene
- Range
-
5006..45570
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_005173.4 → NP_005164.2 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform a
See identical proteins and their annotated locations for NP_005164.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes isoform a.
- Source sequence(s)
-
AA643105, AC005940, AK292716, BC035729, Z69881
- Consensus CDS
-
CCDS45579.1
- UniProtKB/Swiss-Prot
- A8MZG0, D3DTJ8, O60900, O60901, O75501, O75502, Q16115, Q6JHX1, Q8TEX5, Q8TEX6, Q93084
- UniProtKB/TrEMBL
-
A8K9K1
- Related
- ENSP00000380234.3, ENST00000397041.8
- Conserved Domains (1) summary
-
- cd02083
Location:5 → 989
- P-type_ATPase_SERCA; sarco/endoplasmic reticulum Ca(2+)-ATPase (SERCA), similar to mammalian ATP2A1-3/SERCA1-3
-
NM_174953.3 → NP_777613.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform e
See identical proteins and their annotated locations for NP_777613.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) includes two additional exons in the 3' coding region but maintains the reading frame, compared to variant 1. Variant 5 encodes isoform e, which is longer than isoform a.
- Source sequence(s)
-
AA643105, AC005940, AF458229, AK292716, BC035729, Z69881
- Consensus CDS
-
CCDS11042.1
- UniProtKB/TrEMBL
-
A8K9K1
- Related
- ENSP00000353072.3, ENST00000359983.7
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
NM_174954.3 → NP_777614.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform d
See identical proteins and their annotated locations for NP_777614.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) includes two additional exons in the 3' coding region resulting in a frameshift, compared to variant 1. Variant 4 encodes isoform d, which is longer and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AA643105, AC005940, AF458228, AK292716, BC035729, Z69881
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
NM_174955.3 → NP_777615.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform b
See identical proteins and their annotated locations for NP_777615.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) includes an additional exon in the 3' coding region resulting in a frameshift, compared to variant 1. Variant 2 encodes isoform b, which is longer and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AA643105, AC005940, AF458228, AK292716, BC035729, Z69881
- Consensus CDS
-
CCDS11041.1
- UniProtKB/TrEMBL
-
A8K9K1
- Related
- ENSP00000301387.6, ENST00000352011.7
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
NM_174956.3 → NP_777616.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform c
See identical proteins and their annotated locations for NP_777616.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) includes an additional exon in the 3' coding region resulting in a frameshift, compared to variant 1. Variant 3 encodes isoform c, which is longer and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AA643105, AC005940, AF458229, AK292716, BC035729, Z69881
- Consensus CDS
-
CCDS42234.1
- UniProtKB/TrEMBL
-
A8K9K1
- Related
- ENSP00000312577.7, ENST00000309890.11
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
NM_174957.3 → NP_777617.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform f
See identical proteins and their annotated locations for NP_777617.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) uses an alternate in frame splice site in the 3' coding region, compared to variant 1. Variant 6 encodes isoform f, which is one aa shorter than isoform a.
- Source sequence(s)
-
AA643105, AC005940, AF068220, AK292716, BC035729, Z69881
- Consensus CDS
-
CCDS45580.1
- UniProtKB/TrEMBL
-
A8K9K1
- Related
- ENSP00000380236.3, ENST00000397043.7
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
NM_174958.3 → NP_777618.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform c
See identical proteins and their annotated locations for NP_777618.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) includes an additional exon and uses alternate splices in the 3' coding region resulting in a frameshift, compared to variant 1. Variant 7 encodes isoform c, which is longer and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AA643105, AC005940, AF068221, AK292716, BC035729
- Consensus CDS
-
CCDS42234.1
- UniProtKB/TrEMBL
-
A8K9K1
- Related
- ENSP00000380229.3, ENST00000397035.8
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
3923873..3964437 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047436153.1 → XP_047292109.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X9
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_047436151.1 → XP_047292107.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X6
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_011523885.2 → XP_011522187.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X4
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
XM_047436150.1 → XP_047292106.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X5
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_047436152.1 → XP_047292108.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X7
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_011523888.3 → XP_011522190.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X7
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
XM_011523881.3 → XP_011522183.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X1
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
XM_011523882.3 → XP_011522184.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X2
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
XM_011523884.4 → XP_011522186.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X3
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
XM_011523889.2 → XP_011522191.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X8
- UniProtKB/TrEMBL
-
A8K9K1
- Conserved Domains (6) summary
-
- TIGR01116
Location:53 → 989
- ATPase-IIA1_Ca; sarco/endoplasmic reticulum calcium-translocating P-type ATPase
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00689
Location:784 → 987
- Cation_ATPase_C; Cation transporting ATPase, C-terminus
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam12710
Location:604 → 712
- HAD; haloacid dehalogenase-like hydrolase
- pfam13246
Location:419 → 528
- Cation_ATPase; Cation transport ATPase (P-type)
-
XM_011523892.3 → XP_011522194.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X10
- Conserved Domains (3) summary
-
- pfam00122
Location:92 → 340
- E1-E2_ATPase; E1-E2 ATPase
- pfam00690
Location:4 → 72
- Cation_ATPase_N; Cation transporter/ATPase, N-terminus
- pfam13246
Location:419 → 518
- Cation_ATPase; Cation transport ATPase (P-type)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
3813121..3853682 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054316281.1 → XP_054172256.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X9
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316277.1 → XP_054172252.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X6
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316275.1 → XP_054172250.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X4
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316276.1 → XP_054172251.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X5
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316279.1 → XP_054172254.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X7
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316278.1 → XP_054172253.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X7
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316272.1 → XP_054172247.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X1
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316273.1 → XP_054172248.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X2
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316274.1 → XP_054172249.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X3
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316280.1 → XP_054172255.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X8
- UniProtKB/TrEMBL
-
A8K9K1
-
XM_054316282.1 → XP_054172257.1 sarcoplasmic/endoplasmic reticulum calcium ATPase 3 isoform X10