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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_051570.1 RefSeqGene
- Range
-
5009..401364
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001317799.2 → NP_001304728.1 ATPase family gene 2 protein homolog A isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, lacks several exons in the 3' coding region and its 3' terminal exon extends past a splice site that is used in variant 1. This results in a novel 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC109357, AK091384, BC048217, DA619323
- UniProtKB/Swiss-Prot
-
Q8NB90
- Conserved Domains (4) summary
-
- smart00382
Location:386 → 524
- AAA; ATPases associated with a variety of cellular activities
- smart01073
Location:46 → 132
- CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
- pfam00004
Location:389 → 522
- AAA; ATPase family associated with various cellular activities (AAA)
- cl21455
Location:663 → 694
- P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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NM_001345856.2 → NP_001332785.1 ATPase family gene 2 protein homolog A isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate, in-frame splice site in the 5' coding region compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.
- Source sequence(s)
-
AC021205, AC026402, AC109357
-
NM_145207.3 → NP_660208.2 ATPase family gene 2 protein homolog A isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC026402, AK091384, AL832175, DA619323
- Consensus CDS
-
CCDS3730.1
- UniProtKB/Swiss-Prot
- C9JT97, Q86XW1, Q8NB90, Q8NI20, Q8TDL7
- Related
- ENSP00000274008.3, ENST00000274008.5
- Conserved Domains (3) summary
-
- COG0464
Location:370 → 882
- SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
- pfam00004
Location:664 → 796
- AAA; ATPase family associated with various cellular activities (AAA)
- cl21693
Location:65 → 133
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
122923078..123319433
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017007825.2 → XP_016863314.1 ATPase family gene 2 protein homolog A isoform X1
- Conserved Domains (2) summary
-
- TIGR01243
Location:323 → 913
- CDC48; AAA family ATPase, CDC48 subfamily
- cl21693
Location:65 → 133
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
XM_011531678.3 → XP_011529980.1 ATPase family gene 2 protein homolog A isoform X2
- UniProtKB/TrEMBL
-
A0A6Q8PGU6
- Related
- ENSP00000502453.1, ENST00000675612.1
- Conserved Domains (2) summary
-
- smart01073
Location:46 → 132
- CDC48_N; Cell division protein 48 (CDC48) N-terminal domain
- TIGR01243
Location:322 → 912
- CDC48; AAA family ATPase, CDC48 subfamily
-
XM_047449690.1 → XP_047305646.1 ATPase family gene 2 protein homolog A isoform X3
-
XM_047449691.1 → XP_047305647.1 ATPase family gene 2 protein homolog A isoform X4
-
XM_047449696.1 → XP_047305652.1 ATPase family gene 2 protein homolog A isoform X10
-
XM_047449695.1 → XP_047305651.1 ATPase family gene 2 protein homolog A isoform X9
-
XM_017007827.3 → XP_016863316.1 ATPase family gene 2 protein homolog A isoform X5
- Conserved Domains (2) summary
-
- TIGR01243
Location:323 → 803
- CDC48; AAA family ATPase, CDC48 subfamily
- cl21693
Location:65 → 133
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
XM_047449692.1 → XP_047305648.1 ATPase family gene 2 protein homolog A isoform X6
-
XM_047449693.1 → XP_047305649.1 ATPase family gene 2 protein homolog A isoform X7
-
XM_011531679.4 → XP_011529981.1 ATPase family gene 2 protein homolog A isoform X11
- UniProtKB/Swiss-Prot
-
Q8NB90
- Related
-
ENST00000422835.2
- Conserved Domains (2) summary
-
- TIGR01243
Location:323 → 779
- CDC48; AAA family ATPase, CDC48 subfamily
- cl21693
Location:65 → 133
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
XM_047449694.1 → XP_047305650.1 ATPase family gene 2 protein homolog A isoform X8
-
XM_047449697.1 → XP_047305653.1 ATPase family gene 2 protein homolog A isoform X12
-
XM_017007830.2 → XP_016863319.1 ATPase family gene 2 protein homolog A isoform X14
- Conserved Domains (2) summary
-
- TIGR01243
Location:323 → 583
- CDC48; AAA family ATPase, CDC48 subfamily
- cl21693
Location:65 → 133
- CDC48_N; Cell division protein 48 (CDC48), N-terminal domain
-
XM_017007829.2 → XP_016863318.1 ATPase family gene 2 protein homolog A isoform X13
- Conserved Domains (1) summary
-
- TIGR01243
Location:171 → 761
- CDC48; AAA family ATPase, CDC48 subfamily
RNA
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XR_007096375.1 RNA Sequence
-
XR_007096376.1 RNA Sequence
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XR_007096377.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
126227197..126623517
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054349071.1 → XP_054205046.1 ATPase family gene 2 protein homolog A isoform X1
-
XM_054349072.1 → XP_054205047.1 ATPase family gene 2 protein homolog A isoform X2
- UniProtKB/TrEMBL
-
A0A6Q8PGU6
-
XM_054349073.1 → XP_054205048.1 ATPase family gene 2 protein homolog A isoform X3
-
XM_054349074.1 → XP_054205049.1 ATPase family gene 2 protein homolog A isoform X4
-
XM_054349080.1 → XP_054205055.1 ATPase family gene 2 protein homolog A isoform X10
-
XM_054349075.1 → XP_054205050.1 ATPase family gene 2 protein homolog A isoform X5
-
XM_054349076.1 → XP_054205051.1 ATPase family gene 2 protein homolog A isoform X6
-
XM_054349077.1 → XP_054205052.1 ATPase family gene 2 protein homolog A isoform X7
-
XM_054349081.1 → XP_054205056.1 ATPase family gene 2 protein homolog A isoform X11
-
XM_054349079.1 → XP_054205054.1 ATPase family gene 2 protein homolog A isoform X9
-
XM_054349078.1 → XP_054205053.1 ATPase family gene 2 protein homolog A isoform X8
-
XM_054349082.1 → XP_054205057.1 ATPase family gene 2 protein homolog A isoform X12
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XM_054349084.1 → XP_054205059.1 ATPase family gene 2 protein homolog A isoform X14
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XM_054349083.1 → XP_054205058.1 ATPase family gene 2 protein homolog A isoform X13
RNA
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XR_008486940.1 RNA Sequence
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XR_008486941.1 RNA Sequence
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XR_008486942.1 RNA Sequence