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    GTF2IP12 general transcription factor IIi pseudogene 12 [ Homo sapiens (human) ]

    Gene ID: 101926918, updated on 10-Dec-2024

    Summary

    Official Symbol
    GTF2IP12provided by HGNC
    Official Full Name
    general transcription factor IIi pseudogene 12provided by HGNC
    Primary source
    HGNC:HGNC:51723
    See related
    Ensembl:ENSG00000291202 AllianceGenome:HGNC:51723
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 1.2), bone marrow (RPKM 0.7) and 25 other tissues See more
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    Genomic context

    See GTF2IP12 in Genome Data Viewer
    Location:
    4q26
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (119449570..119454628, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (122754689..122759746, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (120370725..120375783, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene capicua transcriptional repressor pseudogene Neighboring gene long intergenic non-protein coding RNA 1061 Neighboring gene RNA, U6 small nuclear 1217, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21856 Neighboring gene septin 7 pseudogene 14 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15655 Neighboring gene phosphodiesterase 5A Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:120453269-120453878 Neighboring gene MPRA-validated peak5097 silencer Neighboring gene small nucleolar RNA SNORA11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135112.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC093752, BC070391
      Related
      ENST00000776662.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      119449570..119454628 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      122754689..122759746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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