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    Tacstd2 tumor-associated calcium signal transducer 2 [ Mus musculus (house mouse) ]

    Gene ID: 56753, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tacstd2provided by MGI
    Official Full Name
    tumor-associated calcium signal transducer 2provided by MGI
    Primary source
    MGI:MGI:1861606
    See related
    Ensembl:ENSMUSG00000051397 AllianceGenome:MGI:1861606
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ly97; EGP-1; TROP2; GA733-1
    Summary
    Involved in several processes, including negative regulation of branching involved in ureteric bud morphogenesis; negative regulation of cellular component organization; and negative regulation of substrate adhesion-dependent cell spreading. Acts upstream of or within positive regulation of stem cell differentiation. Located in several cellular components, including basal plasma membrane; extracellular space; and lateral plasma membrane. Is expressed in alimentary system; genitourinary system; sensory organ; and skin. Human ortholog(s) of this gene implicated in corneal dystrophy and gelatinous drop-like corneal dystrophy. Orthologous to human TACSTD2 (tumor associated calcium signal transducer 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    NEW
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    Genomic context

    See Tacstd2 in Genome Data Viewer
    Location:
    6 C1; 6 30.88 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (67511043..67512806, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (67534059..67535822, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_16185 Neighboring gene STARR-seq mESC enhancer starr_16186 Neighboring gene myc induced nuclear antigen pseudogene Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:67483136-67483367 Neighboring gene predicted gene, 44083 Neighboring gene immunoglobulin kappa chain variable 2-137 Neighboring gene interleukin 23 receptor Neighboring gene immunoglobulin kappa chain complex

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Clone Names

    • MGC141612, MGC141613

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in basal plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in lateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    tumor-associated calcium signal transducer 2
    Names
    cell surface glycoprotein Trop-2
    lymphocyte antigen 97
    tunor-associated calcium signal transducer 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020047.3NP_064431.2  tumor-associated calcium signal transducer 2 precursor

      See identical proteins and their annotated locations for NP_064431.2

      Status: VALIDATED

      Source sequence(s)
      AC124758
      Consensus CDS
      CCDS20221.1
      UniProtKB/Swiss-Prot
      O55130, Q8BGV3
      Related
      ENSMUSP00000060099.5, ENSMUST00000058178.6
      Conserved Domains (1) summary
      pfam00086
      Location:67139
      Thyroglobulin_1; Thyroglobulin type-1 repeat

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      67511043..67512806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)