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    Vmn2r-ps54 vomeronasal 2, receptor, pseudogene 54 [ Mus musculus (house mouse) ]

    Gene ID: 75835, updated on 17-Aug-2024

    Summary

    Official Symbol
    Vmn2r-ps54provided by MGI
    Official Full Name
    vomeronasal 2, receptor, pseudogene 54provided by MGI
    Primary source
    MGI:MGI:1351350
    See related
    Ensembl:ENSMUSG00000121286 AllianceGenome:MGI:1351350
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm10948; Casr-rs5; Gprc2a-rs5; 1700108E19Rik; 4930562N12Rik
    Expression
    Biased expression in testis adult (RPKM 2.4), genital fat pad adult (RPKM 0.7) and 2 other tissues See more
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    Genomic context

    See Vmn2r-ps54 in Genome Data Viewer
    Location:
    7 B3; 7 28.25 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (41317438..41376617)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (41668014..41727193)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:48888363-48888572 Neighboring gene predicted gene, 51480 Neighboring gene zinc finger protein 788 Neighboring gene STARR-seq mESC enhancer starr_18734 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene CTD nuclear envelope phosphatase 1 pseudogene Neighboring gene Cd9 antigen, pseudogene Neighboring gene vomeronasal 2, receptor, pseudogene 55 Neighboring gene vomeronasal 2, receptor, pseudogene 56 Neighboring gene STARR-seq mESC enhancer starr_18735 Neighboring gene vomeronasal 2, receptor 58

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    General gene information

    Markers

    Other Names

    • G protein-coupled receptor, family C, group 2, member A, related sequence 5
    • calcium sensing receptor, related sequence 5
    • vomeronasal 2, receptor 57 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_004441.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC108827
      Related
      ENSMUST00000150147.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      41317438..41376617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_019244.1: Suppressed sequence

      Description
      NG_019244.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    2. NM_029460.2: Suppressed sequence

      Description
      NM_029460.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.