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    3300002I08Rik RIKEN cDNA 3300002I08 gene [ Mus musculus (house mouse) ]

    Gene ID: 69277, updated on 27-Nov-2024

    Summary

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    Official Symbol
    3300002I08Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 3300002I08 geneprovided by MGI
    Primary source
    MGI:MGI:1916527
    See related
    Ensembl:ENSMUSG00000063364 AllianceGenome:MGI:1916527
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2900016H11Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See 3300002I08Rik in Genome Data Viewer
    Location:
    2 G3; 2 74.29 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (150142169..150204922, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (150306363..150362955, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05999 Neighboring gene zinc finger protein 937 Neighboring gene STARR-seq mESC enhancer starr_06000 Neighboring gene zinc finger protein 1005 Neighboring gene STARR-seq mESC enhancer starr_06001 Neighboring gene STARR-positive B cell enhancer ABC_E1012 Neighboring gene mitochondrial ribosomal protein L47 pseudogene Neighboring gene zinc finger protein 1001 Neighboring gene STARR-positive B cell enhancer ABC_E7866 Neighboring gene STARR-seq mESC enhancer starr_06004 Neighboring gene predicted gene 14122 Neighboring gene zinc finger protein 442

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein family member

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027017.1 → NP_081293.4  zinc finger protein family member

      See identical proteins and their annotated locations for NP_081293.4

      Status: VALIDATED

      Source sequence(s)
      AL929042
      Consensus CDS
      CCDS50740.1
      UniProtKB/TrEMBL
      Q9CXH3
      Related
      ENSMUSP00000055454.6, ENSMUST00000051153.6
      Conserved Domains (1) summary
      pfam01352
      Location:21 → 62
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      150142169..150204922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162536.1 → XP_036018429.1  zinc finger protein family member isoform X4

      UniProtKB/TrEMBL
      Q9CXH3
      Conserved Domains (1) summary
      pfam01352
      Location:21 → 62
      KRAB; KRAB box

    2. XM_006500134.5 → XP_006500197.1  zinc finger protein family member isoform X4

      See identical proteins and their annotated locations for XP_006500197.1

      UniProtKB/TrEMBL
      Q9CXH3
      Conserved Domains (1) summary
      pfam01352
      Location:21 → 62
      KRAB; KRAB box

    3. XM_036162535.1 → XP_036018428.1  zinc finger protein family member isoform X4

      UniProtKB/TrEMBL
      Q9CXH3
      Conserved Domains (1) summary
      pfam01352
      Location:21 → 62
      KRAB; KRAB box

    4. XM_011239763.4 → XP_011238065.1  zinc finger protein family member isoform X5

      Conserved Domains (2) summary
      sd00017
      Location:95 → 115
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box

    5. XM_011239764.4 → XP_011238066.1  zinc finger protein family member isoform X6

      Conserved Domains (2) summary
      sd00017
      Location:95 → 115
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box

    6. XM_030252049.2 → XP_030107909.1  zinc finger protein family member isoform X8

      Conserved Domains (1) summary
      pfam01352
      Location:22 → 62
      KRAB; KRAB box

    7. XM_011239765.4 → XP_011238067.1  zinc finger protein family member isoform X7

      Conserved Domains (1) summary
      pfam01352
      Location:22 → 62
      KRAB; KRAB box

    8. XM_030252045.2 → XP_030107905.1  zinc finger protein family member isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:287 → 443
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:263 → 283
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:471 → 496
      zf-H2C2_2; Zinc-finger double domain

    9. XM_030252044.2 → XP_030107904.1  zinc finger protein family member isoform X1

      Conserved Domains (4) summary
      COG5048
      Location:104 → 471
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:291 → 311
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:22 → 62
      KRAB; KRAB box
      pfam13465
      Location:499 → 524
      zf-H2C2_2; Zinc-finger double domain

    10. XM_030252046.2 → XP_030107906.1  zinc finger protein family member isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:54 → 421
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:241 → 261
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:449 → 474
      zf-H2C2_2; Zinc-finger double domain

    11. XM_030252047.2 → XP_030107907.1  zinc finger protein family member isoform X3

      Conserved Domains (3) summary
      COG5048
      Location:54 → 421
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:241 → 261
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:449 → 474
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. XR_004940724.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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