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    4930402F06Rik RIKEN cDNA 4930402F06 gene [ Mus musculus (house mouse) ]

    Gene ID: 74854, updated on 27-Nov-2024

    Summary

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    Official Symbol
    4930402F06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930402F06 geneprovided by MGI
    Primary source
    MGI:MGI:1922104
    See related
    Ensembl:ENSMUSG00000079421 AllianceGenome:MGI:1922104
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be active in Golgi apparatus and vesicle. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 4.7) See more
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    Genomic context

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    See 4930402F06Rik in Genome Data Viewer
    Location:
    2 B; 2 23.58 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (35265483..35287217, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (35375471..35397174, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glyoxalase 1, pseudogene Neighboring gene RIKEN cDNA 4930568D16 gene Neighboring gene predicted gene, 39797 Neighboring gene glycoprotein galactosyltransferase alpha 1, 3 Neighboring gene STARR-positive B cell enhancer ABC_E9510 Neighboring gene STARR-positive B cell enhancer mm9_chr2:35316734-35317035 Neighboring gene STARR-positive B cell enhancer ABC_E2034 Neighboring gene transmembrane emp24 protein transport domain containing 9 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Park S, et al. Biol Reprod, 2020 Aug 4. PMID 32561905, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in lipid glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC74854

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080709.3 → NP_001074178.1  uncharacterized protein LOC74854 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001074178.1

      Status: VALIDATED

      Source sequence(s)
      AL929199
      Consensus CDS
      CCDS38108.1
      UniProtKB/TrEMBL
      A2AUQ8
      Related
      ENSMUSP00000108633.3, ENSMUST00000113010.9
      Conserved Domains (1) summary
      cl11394
      Location:65 → 329
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. NM_001272040.2 → NP_001258969.1  uncharacterized protein LOC74854 isoform 2

      See identical proteins and their annotated locations for NP_001258969.1

      Status: VALIDATED

      Source sequence(s)
      AL929199
      Consensus CDS
      CCDS71041.1
      UniProtKB/TrEMBL
      Q14BP7
      Related
      ENSMUSP00000108632.2, ENSMUST00000113009.2
      Conserved Domains (1) summary
      cl11394
      Location:34 → 298
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      35265483..35287217 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006498395.3 → XP_006498458.1  uncharacterized protein LOC74854 isoform X1

      Conserved Domains (1) summary
      cl11394
      Location:11 → 275
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein Strain
    Heading Accession and Version

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