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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001278569.1 → NP_001265498.1 alpha-crystallin A chain isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
BB371615, BY114969, CA452236, CX734348, EL605017
- Consensus CDS
-
CCDS89060.1
- UniProtKB/TrEMBL
-
A0A494B9Q6
- Related
- ENSMUSP00000157708.2, ENSMUST00000228089.3
- Conserved Domains (3) summary
-
- COG0071
Location:93 → 174
- IbpA; Molecular chaperone IbpA, HSP20 family [Posttranslational modification, protein turnover, chaperones]
- pfam00525
Location:1 → 50
- Crystallin; Alpha crystallin A chain, N terminal
- cl00175
Location:90 → 174
- alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.
-
NM_001278570.1 → NP_001265499.1 alpha-crystallin A chain isoform 3
See identical proteins and their annotated locations for NP_001265499.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the coding region compared to variant 1. It encodes isoform 3 which is shorter compared to isoform 1.
- Source sequence(s)
-
AK143463, BB371615, EL604937
- Consensus CDS
-
CCDS89061.1
- UniProtKB/TrEMBL
-
Q569M7
- Related
- ENSMUSP00000154747.2, ENSMUST00000228716.3
- Conserved Domains (2) summary
-
- cd06497
Location:60 → 145
- ACD_alphaA-crystallin_HspB4; Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers ...
- pfam00525
Location:1 → 51
- Crystallin; Alpha crystallin A chain, N terminal
-
NM_013501.3 → NP_038529.1 alpha-crystallin A chain isoform 2
See identical proteins and their annotated locations for NP_038529.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region compared to variant 1. It encodes isoform 2, also known as alpha-A-ins, which is shorter compared to isoform 1.
- Source sequence(s)
-
BB371615, BC085170, EL605017
- Consensus CDS
-
CCDS37551.1
- UniProtKB/Swiss-Prot
- P24622, Q6LEL4
- UniProtKB/TrEMBL
-
Q546L9
- Related
- ENSMUSP00000019192.6, ENSMUST00000019192.8
- Conserved Domains (3) summary
-
- COG0071
Location:84 → 168
- IbpA; Molecular chaperone IbpA, HSP20 family [Posttranslational modification, protein turnover, chaperones]
- pfam00525
Location:1 → 50
- Crystallin; Alpha crystallin A chain, N terminal
- cl00175
Location:86 → 168
- alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000083.7 Reference GRCm39 C57BL/6J
- Range
-
31896905..31900704
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)