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    Eddm3b epididymal protein 3B [ Mus musculus (house mouse) ]

    Gene ID: 219026, updated on 27-Nov-2024

    Summary

    Official Symbol
    Eddm3bprovided by MGI
    Official Full Name
    epididymal protein 3Bprovided by MGI
    Primary source
    MGI:MGI:2684921
    See related
    Ensembl:ENSMUSG00000072575 AllianceGenome:MGI:2684921
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm75; Fam12
    Summary
    Is expressed in olfactory cortex ventricular layer and telencephalon ventricular layer. Orthologous to human EDDM3A (epididymal protein 3A) and EDDM3B (epididymal protein 3B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward genital fat pad adult (RPKM 65.1) See more
    Orthologs
    NEW
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    Genomic context

    See Eddm3b in Genome Data Viewer
    Location:
    14 C1; 14 26.38 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (51351886..51355248)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (51114429..51117791)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3111 Neighboring gene nuclear encoded tRNA proline 5 (anticodon TGG) Neighboring gene ribonuclease, RNase A family 4 Neighboring gene angiogenin, ribonuclease, RNase A family, 5 Neighboring gene STARR-positive B cell enhancer ABC_E4108 Neighboring gene ribonuclease, RNase A family, 6 Neighboring gene STARR-positive B cell enhancer ABC_E9895 Neighboring gene ribonuclease, RNase A family, 1 (pancreatic)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2)  1 citation
    • Targeted (2) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    epididymal secretory protein E3-beta
    Names
    epididymal secretory protein 3
    family with sequence similarity 12

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203508.2NP_987104.1  epididymal secretory protein E3-beta precursor

      See identical proteins and their annotated locations for NP_987104.1

      Status: VALIDATED

      Source sequence(s)
      AC163664
      Consensus CDS
      CCDS27036.1
      UniProtKB/TrEMBL
      Q8K0E4, W0UTF6
      Related
      ENSMUSP00000098210.4, ENSMUST00000100645.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      51351886..51355248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)