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    LOC440742 uncharacterized LOC440742 [ Homo sapiens (human) ]

    Gene ID: 440742, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC440742
    Gene description
    uncharacterized LOC440742
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC440742 in Genome Data Viewer
    Location:
    1q44
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (244063664..244067910)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (243480154..243484399)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (244226966..244231212)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2774 Neighboring gene uncharacterized LOC124904570 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2831 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2012 Neighboring gene NANOG hESC enhancer GRCh37_chr1:244215360-244215861 Neighboring gene zinc finger and BTB domain containing 18 Neighboring gene Sharpr-MPRA regulatory region 3339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2833 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:244240280-244240780 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:244250689-244250887 Neighboring gene uncharacterized LOC105373261 Neighboring gene RNA, 7SL, cytoplasmic 148, pseudogene Neighboring gene uncharacterized LOC105373260

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188391.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL590483

    2. NR_188392.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL590483

    3. NR_188393.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL590483

    4. NR_188394.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL590483

    5. NR_188395.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL590483

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      244063664..244067910
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      243480154..243484399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001013710.1: Suppressed sequence

      Description
      NM_001013710.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein
    Heading Accession and Version

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