U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ankub1 ankyrin repeat and ubiquitin domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 242037, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ankub1provided by MGI
    Official Full Name
    ankyrin repeat and ubiquitin domain containing 1provided by MGI
    Primary source
    MGI:MGI:2685256
    See related
    Ensembl:ENSMUSG00000074591 AllianceGenome:MGI:2685256
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm410
    Summary
    Is expressed in brain; reproductive system; and respiratory system. Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ankub1 in Genome Data Viewer
    Location:
    3 D; 3 27.97 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (57574843..57599958, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (57667422..57692537, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26671 Neighboring gene microRNA 6377 Neighboring gene predicted gene, 46805 Neighboring gene COMM domain containing 2 Neighboring gene STARR-positive B cell enhancer ABC_E7913 Neighboring gene STARR-seq mESC enhancer starr_07737 Neighboring gene STARR-seq mESC enhancer starr_07738 Neighboring gene ribosomal protein S11 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr3:57539802-57540103 Neighboring gene ring finger protein 13 Neighboring gene ribosomal protein L7A pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein ANKUB1
    Names
    ankrin repeat and ubiquitin domain containing 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033349.3NP_001028521.1  protein ANKUB1 isoform 2

      See identical proteins and their annotated locations for NP_001028521.1

      Status: VALIDATED

      Source sequence(s)
      AC111080
      Consensus CDS
      CCDS17363.1
      UniProtKB/Swiss-Prot
      Q3UUE9
      Related
      ENSMUSP00000096689.4, ENSMUST00000099091.4
      Conserved Domains (2) summary
      smart00213
      Location:178
      UBQ; Ubiquitin homologues
      cl00155
      Location:173
      UBQ; Ubiquitin-like proteins
    2. NM_001433276.1NP_001420205.1  protein ANKUB1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC111080
      UniProtKB/TrEMBL
      A0A0G2JE12, A0A5F8MPK3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      57574843..57599958 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)