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    Gm1123 predicted gene 1123 [ Mus musculus (house mouse) ]

    Gene ID: 382097, updated on 9-Dec-2024

    Summary

    Official Symbol
    Gm1123provided by MGI
    Official Full Name
    predicted gene 1123provided by MGI
    Primary source
    MGI:MGI:2685969
    See related
    Ensembl:ENSMUSG00000044860 AllianceGenome:MGI:2685969
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CLSP
    Summary
    Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in homotypic cell-cell adhesion. Predicted to be active in basolateral plasma membrane; bicellular tight junction; and intercalated disc. Is expressed in face. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in large intestine adult (RPKM 147.4), colon adult (RPKM 47.6) and 2 other tissues See more
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    Genomic context

    See Gm1123 in Genome Data Viewer
    Location:
    9 E3.3; 9 51.41 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (98889018..98917743, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (99006965..99035690, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene forkhead box L2 Neighboring gene STARR-positive B cell enhancer mm9_chr9:98886571-98886872 Neighboring gene Fas apoptotic inhibitory molecule Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta Neighboring gene STARR-seq mESC enhancer starr_25010 Neighboring gene predicted gene 2773 Neighboring gene STARR-seq mESC enhancer starr_25013 Neighboring gene poly(A) binding protein, cytoplasmic 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Clone Names

    • MGC141178

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables cell adhesion molecule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in homotypic cell-cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in basolateral plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in bicellular tight junction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in intercalated disc IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    coxsackie adenovirus receptor-like
    Names
    CAR-like soluble protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080776.1NP_001074245.1  coxsackie adenovirus receptor-like precursor

      See identical proteins and their annotated locations for NP_001074245.1

      Status: PROVISIONAL

      Source sequence(s)
      BC115956
      Consensus CDS
      CCDS40737.1
      UniProtKB/TrEMBL
      Q1RME4
      Related
      ENSMUSP00000076020.7, ENSMUST00000076730.8
      Conserved Domains (2) summary
      smart00410
      Location:25138
      IG_like; Immunoglobulin like
      pfam07686
      Location:24139
      V-set; Immunoglobulin V-set domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      98889018..98917743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)